Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6J53_RS09720 Genome accession   NZ_CP020401
Coordinates   1634659..1635603 (+) Length   314 a.a.
NCBI ID   WP_002256547.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1629659..1640603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS09695 (A6J53_09445) - 1630893..1631480 (-) 588 WP_002223431.1 superoxide dismutase -
  A6J53_RS09705 (A6J53_09455) dnaB 1631642..1633048 (+) 1407 WP_002238995.1 replicative DNA helicase -
  A6J53_RS09710 (A6J53_09460) pilH 1633350..1634015 (+) 666 WP_002256545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J53_RS09715 (A6J53_09465) pilV 1634039..1634662 (+) 624 WP_002256546.1 type IV pilus modification protein PilV Machinery gene
  A6J53_RS09720 (A6J53_09470) pilJ 1634659..1635603 (+) 945 WP_002256547.1 PilW family protein Machinery gene
  A6J53_RS09725 (A6J53_09475) pilK 1635582..1636178 (+) 597 WP_002256548.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J53_RS09730 (A6J53_09480) pilL 1636183..1636680 (+) 498 WP_002251253.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34750.41 Da        Isoelectric Point: 8.0974

>NTDB_id=222178 A6J53_RS09720 WP_002256547.1 1634659..1635603(+) (pilJ) [Neisseria meningitidis strain FDAARGOS_214]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIESDVVPNVAQKNPLFSLKKRNSTNKLIPITESSDINYQNFFQVGSALIFQYGIDDVNASTATTVVSSCAAIS
KPGKQIPTLEDAKKELKISDQDKEQNGNIARQRHVVNAYAVGKIADEEGLFRFQLDDKGKWGNPQLLVKKVRRMEVRYIY
VSNCPEDDDTGKEETFKYTDKFDSAQNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=222178 A6J53_RS09720 WP_002256547.1 1634659..1635603(+) (pilJ) [Neisseria meningitidis strain FDAARGOS_214]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAAAGTGATGTTGTTCCCAATGTGGCGCAAAAAAACCCTCTTTTTTCCTTAAAAAA
AAGGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAGATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCG
CATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCG
AAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTTCGGATCAGGATAAGGAGCAAAATGG
CAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGATGAGGAAGGTTTGTTCCGCTTCC
AATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGGAAGTGCGGTATATCTAT
GTTTCCAACTGTCCTGAAGATGACGATACCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCGCCCAAAA
TGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATA
TTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

86.709

100

0.873

Multiple sequence alignment