Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF102978_RS04620 Genome accession   NZ_CP020380
Coordinates   884817..885524 (+) Length   235 a.a.
NCBI ID   WP_021374588.1    Uniprot ID   -
Organism   Clostridioides difficile strain DSM 102978     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 879817..890524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF102978_RS04590 (CDIF102978_00901) cdd1 880578..880823 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF102978_RS04595 (CDIF102978_00902) - 881040..881309 (-) 270 WP_021374611.1 DUF3795 domain-containing protein -
  CDIF102978_RS04600 (CDIF102978_00903) - 881441..881665 (-) 225 WP_235660142.1 hypothetical protein -
  CDIF102978_RS04605 (CDIF102978_00904) - 882222..882959 (-) 738 WP_003439186.1 ABC transporter permease -
  CDIF102978_RS04610 (CDIF102978_00905) - 882971..883678 (-) 708 WP_234779740.1 ABC transporter permease -
  CDIF102978_RS04615 (CDIF102978_00906) - 883732..884655 (-) 924 WP_169472047.1 ABC transporter ATP-binding protein -
  CDIF102978_RS04620 (CDIF102978_00907) scnR 884817..885524 (+) 708 WP_021374588.1 response regulator transcription factor Regulator
  CDIF102978_RS04625 (CDIF102978_00908) - 885569..886975 (+) 1407 WP_032547150.1 sensor histidine kinase -
  CDIF102978_RS04630 (CDIF102978_00909) - 888103..888492 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF102978_RS04635 (CDIF102978_00911) - 889201..889671 (+) 471 WP_021374621.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26689.14 Da        Isoelectric Point: 6.1467

>NTDB_id=221978 CDIF102978_RS04620 WP_021374588.1 884817..885524(+) (scnR) [Clostridioides difficile strain DSM 102978]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLLTVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=221978 CDIF102978_RS04620 WP_021374588.1 884817..885524(+) (scnR) [Clostridioides difficile strain DSM 102978]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTAAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAAGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTCTCTATTATGAGAAAAATTAGAGAGACATCTAAGATACCA
GTTATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGATGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGACTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCATTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAGTGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACCCCTAAACATCTTCTTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

98.298

0.485
  micA Streptococcus pneumoniae Cp1015

40.426

100

0.404
  vicR Streptococcus mutans UA159

38.793

98.723

0.383

Multiple sequence alignment