Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSK2_RS16015 Genome accession   NZ_CP020367
Coordinates   3103703..3104347 (-) Length   214 a.a.
NCBI ID   WP_080529735.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098703..3109347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS15980 (BSK2_15980) mrpB 3099895..3100326 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BSK2_RS15985 (BSK2_15985) mrpC 3100326..3100667 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BSK2_RS15990 (BSK2_15990) mrpD 3100660..3102141 (+) 1482 WP_080529734.1 Na+/H+ antiporter subunit D -
  BSK2_RS15995 (BSK2_15995) mrpE 3102147..3102623 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BSK2_RS16000 (BSK2_16000) mrpF 3102623..3102907 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BSK2_RS16005 (BSK2_16005) mnhG 3102891..3103265 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  BSK2_RS16010 (BSK2_16010) yuxO 3103304..3103684 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  BSK2_RS16015 (BSK2_16015) comA 3103703..3104347 (-) 645 WP_080529735.1 two-component system response regulator ComA Regulator
  BSK2_RS16020 (BSK2_16020) comP 3104428..3106689 (-) 2262 WP_080529736.1 histidine kinase Regulator
  BSK2_RS16025 (BSK2_16025) comX 3106705..3106926 (-) 222 WP_014480704.1 competence pheromone ComX -
  BSK2_RS16030 (BSK2_16030) - 3106928..3107791 (-) 864 WP_080529737.1 polyprenyl synthetase family protein -
  BSK2_RS16035 (BSK2_16035) degQ 3107976..3108116 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BSK2_RS21155 - 3108338..3108463 (+) 126 WP_003228793.1 hypothetical protein -
  BSK2_RS16040 (BSK2_16040) - 3108578..3108946 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24158.53 Da        Isoelectric Point: 4.6857

>NTDB_id=221779 BSK2_RS16015 WP_080529735.1 3103703..3104347(-) (comA) [Bacillus subtilis strain GQJK2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFTYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=221779 BSK2_RS16015 WP_080529735.1 3103703..3104347(-) (comA) [Bacillus subtilis strain GQJK2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTACTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment