Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BLMD_RS13260 Genome accession   NZ_CP020352
Coordinates   2660379..2662109 (-) Length   576 a.a.
NCBI ID   WP_048349987.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2655379..2667109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS13235 (BLMD_13235) - 2656004..2656624 (-) 621 WP_048349990.1 N-acetylmuramoyl-L-alanine amidase family protein -
  BLMD_RS13240 (BLMD_13240) - 2656658..2656978 (-) 321 WP_048349989.1 membrane lipoprotein lipid attachment site-containing protein -
  BLMD_RS13250 (BLMD_13250) spo0A 2657824..2658624 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  BLMD_RS13255 (BLMD_13255) spoIVB 2658914..2660164 (-) 1251 WP_230459179.1 SpoIVB peptidase -
  BLMD_RS13260 (BLMD_13260) recN 2660379..2662109 (-) 1731 WP_048349987.1 DNA repair protein RecN Machinery gene
  BLMD_RS13265 (BLMD_13265) ahrC 2662141..2662590 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  BLMD_RS13270 (BLMD_13270) - 2662754..2663599 (-) 846 WP_048349986.1 TlyA family RNA methyltransferase -
  BLMD_RS13275 (BLMD_13275) dxs 2663596..2665497 (-) 1902 WP_023855166.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BLMD_RS13280 (BLMD_13280) - 2665730..2666620 (-) 891 WP_048349985.1 polyprenyl synthetase family protein -
  BLMD_RS13285 (BLMD_13285) - 2666610..2666870 (-) 261 WP_048349984.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64563.35 Da        Isoelectric Point: 4.7720

>NTDB_id=221640 BLMD_RS13260 WP_048349987.1 2660379..2662109(-) (recN) [Bacillus paralicheniformis strain MDJK30]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=221640 BLMD_RS13260 WP_048349987.1 2660379..2662109(-) (recN) [Bacillus paralicheniformis strain MDJK30]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGTCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAAGCCTCGGATGACATGATCGTTATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTCGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTCACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCACAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGTTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCGTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGTGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.597

100

0.816

Multiple sequence alignment