Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BLMD_RS13250 Genome accession   NZ_CP020352
Coordinates   2657824..2658624 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652824..2663624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS13225 (BLMD_13225) - 2654779..2655033 (+) 255 WP_048350556.1 DUF2627 domain-containing protein -
  BLMD_RS13230 (BLMD_13230) - 2655144..2655869 (-) 726 WP_048349991.1 glycerophosphodiester phosphodiesterase -
  BLMD_RS13235 (BLMD_13235) - 2656004..2656624 (-) 621 WP_048349990.1 N-acetylmuramoyl-L-alanine amidase family protein -
  BLMD_RS13240 (BLMD_13240) - 2656658..2656978 (-) 321 WP_048349989.1 membrane lipoprotein lipid attachment site-containing protein -
  BLMD_RS13250 (BLMD_13250) spo0A 2657824..2658624 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  BLMD_RS13255 (BLMD_13255) spoIVB 2658914..2660164 (-) 1251 WP_230459179.1 SpoIVB peptidase -
  BLMD_RS13260 (BLMD_13260) recN 2660379..2662109 (-) 1731 WP_048349987.1 DNA repair protein RecN Machinery gene
  BLMD_RS13265 (BLMD_13265) ahrC 2662141..2662590 (-) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  BLMD_RS13270 (BLMD_13270) - 2662754..2663599 (-) 846 WP_048349986.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=221639 BLMD_RS13250 WP_003183361.1 2657824..2658624(-) (spo0A) [Bacillus paralicheniformis strain MDJK30]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=221639 BLMD_RS13250 WP_003183361.1 2657824..2658624(-) (spo0A) [Bacillus paralicheniformis strain MDJK30]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATTATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTTAGCGGAAACGGGTCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGATGCCAGCATCACGACCATCATC
CACGAGATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAATGACATCGA
ACTGCTCGGGAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACAACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAATATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment