Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B5U27_RS19240 Genome accession   NZ_CP020351
Coordinates   4090803..4093019 (-) Length   738 a.a.
NCBI ID   WP_005743843.1    Uniprot ID   A0AB37R6Q6
Organism   Pseudomonas amygdali pv. lachrymans strain NM002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4085803..4098019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5U27_RS19210 (B5U27_19210) murB 4086603..4087622 (-) 1020 WP_005743846.1 UDP-N-acetylmuramate dehydrogenase -
  B5U27_RS19215 (B5U27_19215) kdsB 4087657..4088421 (-) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B5U27_RS19220 (B5U27_19220) - 4088418..4088603 (-) 186 WP_002552679.1 Trm112 family protein -
  B5U27_RS19225 (B5U27_19225) lpxK 4088621..4089616 (-) 996 WP_005743845.1 tetraacyldisaccharide 4'-kinase -
  B5U27_RS19230 (B5U27_19230) - 4089616..4090047 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  B5U27_RS19235 (B5U27_19235) exbB 4090044..4090721 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B5U27_RS19240 (B5U27_19240) comA 4090803..4093019 (-) 2217 WP_005743843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B5U27_RS19245 (B5U27_19245) - 4093156..4093944 (-) 789 WP_005743842.1 ABC transporter permease -
  B5U27_RS19250 (B5U27_19250) - 4093941..4094873 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  B5U27_RS19255 (B5U27_19255) - 4095057..4095680 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80399.74 Da        Isoelectric Point: 9.8035

>NTDB_id=221596 B5U27_RS19240 WP_005743843.1 4090803..4093019(-) (comA) [Pseudomonas amygdali pv. lachrymans strain NM002]
MRTGMIALASGLVALRFLPALPPTWLLLLMPILALMLLPLRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPCACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=221596 B5U27_RS19240 WP_005743843.1 4090803..4093019(-) (comA) [Pseudomonas amygdali pv. lachrymans strain NM002]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGCTTCGTACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACTT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTTTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAAGGCGTGGTGCGTTTCGAACTGGAAGGGGCAAGGTCGCGCAGGGCCATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGTTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTACCCTGGCTGCCTTGTGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGTTTGCCAATTTGCTGGCTGTGCCTTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTCCCTGTTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGAGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCGGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCGGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGTTGTGCGTT
TTTCCGCCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGTTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGCTGGGAGCAGGGGCCTGATGGCA
ATCCCGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGTCTG
GGTACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.925

97.154

0.602
  comA Ralstonia pseudosolanacearum GMI1000

32.904

100

0.381

Multiple sequence alignment