Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B5U27_RS19235 Genome accession   NZ_CP020351
Coordinates   4090044..4090721 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali pv. lachrymans strain NM002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4085044..4095721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5U27_RS19210 (B5U27_19210) murB 4086603..4087622 (-) 1020 WP_005743846.1 UDP-N-acetylmuramate dehydrogenase -
  B5U27_RS19215 (B5U27_19215) kdsB 4087657..4088421 (-) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B5U27_RS19220 (B5U27_19220) - 4088418..4088603 (-) 186 WP_002552679.1 Trm112 family protein -
  B5U27_RS19225 (B5U27_19225) lpxK 4088621..4089616 (-) 996 WP_005743845.1 tetraacyldisaccharide 4'-kinase -
  B5U27_RS19230 (B5U27_19230) - 4089616..4090047 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  B5U27_RS19235 (B5U27_19235) exbB 4090044..4090721 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B5U27_RS19240 (B5U27_19240) comA 4090803..4093019 (-) 2217 WP_005743843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B5U27_RS19245 (B5U27_19245) - 4093156..4093944 (-) 789 WP_005743842.1 ABC transporter permease -
  B5U27_RS19250 (B5U27_19250) - 4093941..4094873 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  B5U27_RS19255 (B5U27_19255) - 4095057..4095680 (-) 624 WP_004657835.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=221595 B5U27_RS19235 WP_002552676.1 4090044..4090721(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain NM002]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=221595 B5U27_RS19235 WP_002552676.1 4090044..4090721(-) (exbB) [Pseudomonas amygdali pv. lachrymans strain NM002]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATCCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment