Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C1H56_RS02380 Genome accession   NZ_CP025936
Coordinates   485160..485885 (-) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain A1552     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480160..490885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H56_RS02365 (C1H56_02365) - 481795..482835 (-) 1041 WP_000595738.1 spermidine/putrescine ABC transporter substrate-binding protein -
  C1H56_RS02370 (C1H56_02370) pheA 483017..484192 (-) 1176 WP_000130282.1 prephenate dehydratase -
  C1H56_RS02375 (C1H56_02375) hpf 484432..484758 (-) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C1H56_RS02380 (C1H56_02380) comL 485160..485885 (-) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  C1H56_RS02385 (C1H56_02385) rluD 486040..487014 (+) 975 WP_000941107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C1H56_RS02390 (C1H56_02390) pgeF 487017..487739 (+) 723 WP_000602844.1 peptidoglycan editing factor PgeF -
  C1H56_RS02395 (C1H56_02395) clpC 487864..490437 (+) 2574 WP_001235051.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=221392 C1H56_RS02380 WP_000877198.1 485160..485885(-) (comL) [Vibrio cholerae strain A1552]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=221392 C1H56_RS02380 WP_000877198.1 485160..485885(-) (comL) [Vibrio cholerae strain A1552]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378