Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B5S25_RS19365 Genome accession   NZ_CP020327
Coordinates   3694159..3695112 (+) Length   317 a.a.
NCBI ID   WP_024094004.1    Uniprot ID   A0AAP5JX12
Organism   Paenibacillus larvae subsp. pulvifaciens strain CCM 38     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689159..3700112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S25_RS19350 (B5S25_19350) fdhF 3689592..3692540 (+) 2949 WP_079940666.1 formate dehydrogenase subunit alpha -
  B5S25_RS19355 (B5S25_19355) - 3692543..3693034 (+) 492 WP_023484252.1 DUF1641 domain-containing protein -
  B5S25_RS19360 (B5S25_19360) fdhD 3693051..3693845 (+) 795 WP_079940830.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  B5S25_RS19365 (B5S25_19365) ceuB 3694159..3695112 (+) 954 WP_024094004.1 ABC transporter permease Machinery gene
  B5S25_RS19370 (B5S25_19370) - 3695102..3696055 (+) 954 WP_024094005.1 iron chelate uptake ABC transporter family permease subunit -
  B5S25_RS19375 (B5S25_19375) - 3696049..3696807 (+) 759 WP_023484248.1 ABC transporter ATP-binding protein -
  B5S25_RS19380 (B5S25_19380) - 3696899..3697852 (+) 954 WP_077995258.1 siderophore ABC transporter substrate-binding protein -
  B5S25_RS19385 (B5S25_19385) - 3698362..3698619 (+) 258 WP_077995259.1 YqkE family protein -
  B5S25_RS19390 (B5S25_19390) - 3698650..3699789 (+) 1140 WP_077995260.1 lactonase family protein -
  B5S25_RS25830 - 3699927..3700017 (+) 91 Protein_3825 transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35098.42 Da        Isoelectric Point: 10.2577

>NTDB_id=221393 B5S25_RS19365 WP_024094004.1 3694159..3695112(+) (ceuB) [Paenibacillus larvae subsp. pulvifaciens strain CCM 38]
MKLRYLFIALVILSFASVFIGVKEVSPMDMLHLGEEQVQVILISRIPRLVSIIIAGVSMSISGLIMQQISRNKFVSPTTA
GTMDFARLGILVSIMLFTTASPLVKMLVAFIFALLGTLLFMKILKRIRFKDTIFIPLVGIMFGNVVSSITTFFAYKYDLI
QNINAWLQGDFSMIIKGRYELLYLSIPIVIIAFLYANKFTVAGMGEDFSKNLGVNYNRVVNVGLVIVALVSAVVILTVGT
IPFLGLIIPNIVSIYRGDNLRNSLPHTALLGAVFVLFCDILGRIIIFPYEVSISVTVGVIGSIIFLYLLFRRNAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=221393 B5S25_RS19365 WP_024094004.1 3694159..3695112(+) (ceuB) [Paenibacillus larvae subsp. pulvifaciens strain CCM 38]
ATGAAACTACGATACCTTTTCATAGCGCTTGTTATCTTATCTTTCGCCTCCGTTTTCATCGGGGTAAAAGAAGTTTCCCC
GATGGATATGCTTCATCTGGGGGAAGAACAGGTCCAGGTTATTCTTATTAGCCGGATTCCCCGTCTGGTCAGTATTATCA
TCGCGGGAGTCAGTATGAGCATTAGCGGTCTTATCATGCAGCAGATCAGCCGCAACAAATTTGTCTCGCCGACTACGGCC
GGAACGATGGACTTCGCCAGGCTGGGTATTCTCGTTTCGATTATGCTGTTCACCACGGCCAGTCCACTGGTGAAGATGCT
TGTAGCTTTCATCTTTGCTTTGCTGGGGACGTTATTGTTCATGAAAATCCTTAAACGGATCAGGTTCAAGGATACGATCT
TTATCCCGCTTGTCGGCATCATGTTCGGGAATGTTGTAAGCTCGATCACAACTTTCTTTGCTTACAAATATGACTTGATT
CAGAATATCAATGCATGGCTTCAGGGTGATTTCTCAATGATCATTAAAGGGAGGTACGAGCTTTTATATCTTAGTATTCC
TATTGTGATCATTGCCTTTCTCTATGCCAACAAGTTTACTGTGGCGGGAATGGGAGAAGATTTCTCCAAAAACTTGGGTG
TAAACTATAACCGGGTTGTCAATGTTGGGCTCGTGATCGTAGCACTGGTCTCCGCAGTGGTAATCCTGACTGTAGGTACT
ATTCCGTTTCTTGGCTTGATTATTCCGAATATCGTTTCGATCTACAGGGGAGATAATCTGAGAAACAGTCTTCCCCACAC
AGCATTGCTTGGAGCGGTGTTCGTTCTTTTCTGTGACATTCTAGGCCGGATTATCATTTTCCCGTATGAGGTATCTATAA
GTGTTACGGTCGGAGTGATCGGAAGCATCATCTTCCTTTACTTACTATTTAGGAGAAACGCTTATGCATCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment