Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CXW72_RS03700 Genome accession   NZ_CP025913
Coordinates   731279..731911 (+) Length   210 a.a.
NCBI ID   WP_001735800.1    Uniprot ID   -
Organism   Escherichia coli strain 203740     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 726279..736911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW72_RS03675 yheS 726448..728361 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  CXW72_RS03680 yheT 728361..729383 (+) 1023 WP_000057356.1 hydrolase -
  CXW72_RS03685 yheU 729377..729595 (+) 219 WP_000907085.1 YheU family protein -
  CXW72_RS03690 prkB 729649..730518 (+) 870 WP_001274680.1 phosphoribulokinase -
  CXW72_RS03695 yhfA 730573..730977 (-) 405 WP_001148908.1 OsmC family protein -
  CXW72_RS03700 crp 731279..731911 (+) 633 WP_001735800.1 cAMP-activated global transcriptional regulator CRP Regulator
  CXW72_RS03705 yhfK 731962..734052 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CXW72_RS03710 argD 734119..735339 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CXW72_RS03715 pabA 735425..735988 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CXW72_RS03720 fic 736020..736622 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CXW72_RS03725 yhfG 736612..736779 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23649.44 Da        Isoelectric Point: 8.2778

>NTDB_id=221049 CXW72_RS03700 WP_001735800.1 731279..731911(+) (crp) [Escherichia coli strain 203740]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGHIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=221049 CXW72_RS03700 WP_001735800.1 731279..731911(+) (crp) [Escherichia coli strain 203740]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCATATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467