Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B4X03_RS02265 Genome accession   NZ_CP020085
Coordinates   485589..486230 (+) Length   213 a.a.
NCBI ID   WP_021113803.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 480589..491230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS02240 - 480622..481656 (-) 1035 WP_021114331.1 methionine synthase -
  B4X03_RS02245 - 481679..482656 (-) 978 WP_021114330.1 DUF1852 domain-containing protein -
  B4X03_RS02250 ffh 482961..484343 (+) 1383 WP_010786427.1 signal recognition particle protein -
  B4X03_RS02260 - 484636..485324 (+) 689 Protein_437 ISAs1 family transposase -
  B4X03_RS02265 sxy/tfoX 485589..486230 (+) 642 WP_021113803.1 TfoX/Sxy family DNA transformation protein Regulator
  B4X03_RS02270 fumC 486378..487772 (+) 1395 WP_021113234.1 class II fumarate hydratase -
  B4X03_RS02275 - 487954..489132 (+) 1179 WP_043896532.1 ATP-grasp domain-containing protein -
  B4X03_RS02280 - 489267..490025 (+) 759 WP_021112874.1 esterase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24774.79 Da        Isoelectric Point: 9.8218

>NTDB_id=220953 B4X03_RS02265 WP_021113803.1 485589..486230(+) (sxy/tfoX) [Glaesserella parasuis strain CL120103]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVNIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=220953 B4X03_RS02265 WP_021113803.1 485589..486230(+) (sxy/tfoX) [Glaesserella parasuis strain CL120103]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGAATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTCAATGTTAAAT
AA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(120-195)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

99.531

100

0.995
  sxy/tfoX Actinobacillus suis H91-0380

41.905

98.592

0.413
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.713

98.122

0.39

Multiple sequence alignment