Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXV43_RS15120 Genome accession   NZ_CP025903
Coordinates   3051666..3052403 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 300709     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3046666..3057403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV43_RS15105 clpC 3047120..3049693 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CXV43_RS15110 yfiH 3049823..3050554 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CXV43_RS15115 rluD 3050551..3051531 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXV43_RS15120 comL 3051666..3052403 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXV43_RS15125 raiA 3052674..3053015 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXV43_RS15130 pheL 3053119..3053166 (+) 48 WP_010723158.1 phe operon leader peptide -
  CXV43_RS15135 pheA 3053265..3054425 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXV43_RS15140 tyrA 3054468..3055589 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXV43_RS15145 aroF 3055600..3056670 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXV43_RS15150 yfiL 3056880..3057245 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220908 CXV43_RS15120 WP_000197686.1 3051666..3052403(+) (comL) [Escherichia coli strain 300709]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220908 CXV43_RS15120 WP_000197686.1 3051666..3052403(+) (comL) [Escherichia coli strain 300709]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment