Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Vc3S01_RS23960 Genome accession   NZ_CP020077
Coordinates   1427389..1428690 (+) Length   433 a.a.
NCBI ID   WP_283166056.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422389..1433690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS23950 (Vc3S01_A1312) - 1424848..1425834 (+) 987 WP_077201620.1 peptidoglycan DD-metalloendopeptidase family protein -
  Vc3S01_RS23955 (Vc3S01_A1313) ylqF 1426155..1427099 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  Vc3S01_RS23960 (Vc3S01_A1314) cqsA 1427389..1428690 (+) 1302 WP_283166056.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Vc3S01_RS23965 (Vc3S01_A1315) cqsS 1428797..1430842 (-) 2046 WP_045369090.1 hybrid sensor histidine kinase/response regulator Regulator
  Vc3S01_RS23970 (Vc3S01_A1316) - 1431146..1431763 (+) 618 WP_050914172.1 HAD family phosphatase -
  Vc3S01_RS23975 (Vc3S01_A1317) - 1431838..1432386 (-) 549 WP_077201618.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48880.79 Da        Isoelectric Point: 6.4998

>NTDB_id=220882 Vc3S01_RS23960 WP_283166056.1 1427389..1428690(+) (cqsA) [Vibrio campbellii strain 20130629003S01]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDNSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=220882 Vc3S01_RS23960 WP_283166056.1 1427389..1428690(+) (cqsA) [Vibrio campbellii strain 20130629003S01]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAGCAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACAACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGACTTCTTTGCACACATGTCTTTGTGGGAAGGTATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTAGTGAAAGCATTAGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGCGCCAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515

Multiple sequence alignment