Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Vc3S01_RS02145 Genome accession   NZ_CP020076
Coordinates   443592..444236 (-) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 438592..449236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS02135 (Vc3S01_0375) uvrA 439594..442416 (-) 2823 WP_077200162.1 excinuclease ABC subunit UvrA -
  Vc3S01_RS02140 (Vc3S01_0376) galU 442555..443427 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Vc3S01_RS02145 (Vc3S01_0377) qstR 443592..444236 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  Vc3S01_RS02150 (Vc3S01_0378) ssb 444530..445066 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  Vc3S01_RS02155 (Vc3S01_0379) csrD 445314..447323 (+) 2010 WP_077200163.1 RNase E specificity factor CsrD -
  Vc3S01_RS02160 (Vc3S01_0380) - 447335..448783 (+) 1449 WP_086368947.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=220844 Vc3S01_RS02145 WP_005432827.1 443592..444236(-) (qstR) [Vibrio campbellii strain 20130629003S01]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=220844 Vc3S01_RS02145 WP_005432827.1 443592..444236(-) (qstR) [Vibrio campbellii strain 20130629003S01]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCAATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACAGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment