Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Vc3S01_RS01565 Genome accession   NZ_CP020076
Coordinates   317781..318413 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio campbellii strain 20130629003S01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312781..323413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS01550 (Vc3S01_0270) astA 314021..315040 (+) 1020 WP_045370250.1 arginine N-succinyltransferase -
  Vc3S01_RS01555 (Vc3S01_0271) astD 315069..316526 (+) 1458 WP_077200148.1 succinylglutamate-semialdehyde dehydrogenase -
  Vc3S01_RS01560 (Vc3S01_0272) - 316791..317582 (+) 792 WP_038892627.1 DUF1338 domain-containing protein -
  Vc3S01_RS01565 (Vc3S01_0273) crp 317781..318413 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  Vc3S01_RS01570 (Vc3S01_0274) - 318653..319522 (-) 870 WP_005432770.1 phosphoribulokinase -
  Vc3S01_RS01575 (Vc3S01_0275) - 319647..319859 (-) 213 WP_005432763.1 YheU family protein -
  Vc3S01_RS01580 (Vc3S01_0276) - 319930..320937 (-) 1008 WP_045370245.1 hydrolase -
  Vc3S01_RS01585 (Vc3S01_0277) - 321038..321517 (-) 480 WP_005432772.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=220838 Vc3S01_RS01565 WP_005381432.1 317781..318413(-) (crp) [Vibrio campbellii strain 20130629003S01]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=220838 Vc3S01_RS01565 WP_005381432.1 317781..318413(-) (crp) [Vibrio campbellii strain 20130629003S01]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment