Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CXX05_RS16430 Genome accession   NZ_CP025881
Coordinates   3224656..3225288 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 503440     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219656..3230288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX05_RS16405 yheS 3219825..3221738 (+) 1914 WP_000634793.1 ABC transporter ATP-binding protein -
  CXX05_RS16410 yheT 3221738..3222760 (+) 1023 WP_000057405.1 hydrolase -
  CXX05_RS16415 yheU 3222754..3222972 (+) 219 WP_000907085.1 YheU family protein -
  CXX05_RS16420 prkB 3223026..3223895 (+) 870 WP_001274680.1 phosphoribulokinase -
  CXX05_RS16425 yhfA 3223950..3224354 (-) 405 WP_001148908.1 OsmC family protein -
  CXX05_RS16430 crp 3224656..3225288 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CXX05_RS16435 yhfK 3225339..3227429 (+) 2091 WP_001297515.1 YccS/YhfK family putative transporter -
  CXX05_RS16440 argD 3227496..3228716 (-) 1221 WP_001297516.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CXX05_RS16445 pabA 3228802..3229365 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CXX05_RS16450 fic 3229397..3229999 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CXX05_RS16455 yhfG 3229989..3230156 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=220756 CXX05_RS16430 WP_000242755.1 3224656..3225288(+) (crp) [Escherichia coli strain 503440]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=220756 CXX05_RS16430 WP_000242755.1 3224656..3225288(+) (crp) [Escherichia coli strain 503440]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467