Detailed information NTG0220623

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BVC89_RS10750
• Genome accession: NZ_CP020038
• Coordinates: 2552010..2553377 (-)
• Length: 455 a.a.
• NCBI ID: WP_086931195.1
• Uniprot ID: -
• Organism: Agarilytica rhodophyticola strain 017
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2547010..2558377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVC89_RS30560	-	2550681..2551139 (+)	459	WP_086931193.1	type IV pilin protein	-
BVC89_RS10745	-	2551203..2551760 (-)	558	WP_086931194.1	GspH/FimT family pseudopilin	-
BVC89_RS10750	pilR	2552010..2553377 (-)	1368	WP_086931195.1	sigma-54 dependent transcriptional regulator	Regulator
BVC89_RS10755	-	2553380..2554966 (-)	1587	WP_245929374.1	ATP-binding protein	-
BVC89_RS10760	-	2555195..2556826 (+)	1632	WP_086931196.1	NAD+ synthase	-
BVC89_RS10765	-	2556887..2557825 (-)	939	WP_086931197.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50596.70 Da
• Isoelectric Point: 5.5309

>NTDB_id=220623 BVC89_RS10750 WP_086931195.1 2552010..2553377(-) (pilR) [Agarilytica rhodophyticola strain 017]
MTTRALIIDDEPDIRELLSITLNRMDISTEVAANVSQAKKLLESKTFNLCLTDMRLPDGSGLEIVQHVQKNIPELPIAVI
TAHGNMDTAVQAMKSGAFDFVNKPIDVNALRHLVNTAITSNQLTDSEQYDDQIIGDSPSIQALKVSIRKLARSQAPIYIS
GESGSGKELVARSIHNQGPRAKKPFVPVNCGAIPKELMESEFFGHKKGSFTGATQDKLGLFQAAEGGTLFLDEVADLPLD
MQVKLLRAIQEKAIRPVGAHGEIITDVRILCATHKNLQRLVEADEFRQDLFYRLNVIQLNVPSLRDRGEDIPALAQYFLQ
RIDGGNSQPQTTLSKGALAELMRYSFPGNIRELENILERAYTLCDNSTIEVGDLLLSASQKISQKDNQPLNYYNNCLKYP
SIDEYLAEVEKEILSDALEHVRWNKTLAAKKLGISFRSFRYRLSKLGLADDTDTE

Nucleotide

• Length: 1368 bp

>NTDB_id=220623 BVC89_RS10750 WP_086931195.1 2552010..2553377(-) (pilR) [Agarilytica rhodophyticola strain 017]
ATGACAACACGAGCATTAATTATTGATGACGAACCAGACATCCGCGAACTTCTATCTATCACTCTAAATCGCATGGATAT
TTCAACAGAAGTGGCGGCTAATGTCTCGCAGGCAAAAAAATTGCTAGAGAGCAAAACATTTAATTTGTGTCTGACCGACA
TGAGACTGCCCGATGGCAGTGGTCTTGAAATAGTACAACATGTACAAAAGAATATCCCTGAATTACCTATTGCCGTCATC
ACGGCACACGGCAACATGGATACCGCTGTTCAAGCAATGAAGTCCGGCGCCTTTGACTTTGTCAACAAGCCCATTGATGT
CAACGCTCTACGTCACCTAGTTAACACGGCCATTACCTCAAACCAGCTCACCGATAGTGAACAATACGACGATCAAATCA
TCGGTGATTCACCGAGTATTCAAGCGTTAAAAGTGTCGATTAGAAAACTCGCTCGGTCACAAGCACCTATATATATCAGT
GGTGAGTCTGGCAGTGGTAAAGAACTAGTGGCAAGATCCATTCACAATCAAGGGCCAAGAGCAAAAAAACCTTTCGTTCC
TGTAAACTGTGGGGCGATTCCAAAAGAGCTTATGGAAAGTGAGTTTTTTGGCCATAAGAAAGGATCTTTCACTGGTGCAA
CTCAAGACAAACTAGGCTTGTTTCAAGCAGCAGAAGGTGGCACTCTATTTTTAGATGAAGTGGCAGATTTACCGTTAGAT
ATGCAGGTAAAGTTGCTACGAGCAATTCAAGAAAAAGCGATCCGACCTGTCGGTGCACATGGAGAAATTATCACTGATGT
AAGAATTTTATGTGCAACACATAAGAACTTACAACGCTTAGTAGAGGCAGATGAGTTTCGCCAAGACTTATTTTACCGTC
TAAATGTGATTCAGTTAAACGTTCCTAGCTTGAGAGATCGTGGTGAAGATATCCCTGCCCTAGCCCAGTACTTTTTGCAA
CGTATTGATGGTGGTAATAGTCAACCACAAACAACGCTATCCAAAGGTGCCCTAGCAGAACTCATGCGCTATTCGTTTCC
AGGAAATATTCGCGAGTTGGAAAATATTCTTGAACGAGCTTACACCCTCTGTGACAACTCTACTATTGAAGTTGGCGACC
TACTTTTATCGGCATCACAAAAGATTAGCCAGAAGGATAATCAACCTCTTAACTATTATAACAACTGTTTAAAATACCCA
TCGATCGATGAGTACCTGGCTGAGGTTGAGAAAGAGATTTTATCAGACGCCCTTGAGCATGTTCGTTGGAATAAAACACT
TGCAGCAAAAAAATTAGGGATAAGCTTTAGGTCTTTTCGCTATCGCTTATCCAAGCTGGGATTGGCCGATGATACCGATA
CAGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Bacterial regulatory protein, Fis family (HTH_8) (406-446)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.865	98.022	0.587
pilR	Acinetobacter baumannii strain A118	49.786	100	0.512
luxO	Vibrio cholerae strain A1552	37.443	96.264	0.36