Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXX09_RS18510 Genome accession   NZ_CP025865
Coordinates   3760801..3761538 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 504211     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3755801..3766538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX09_RS18480 yfiL 3755959..3756324 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CXX09_RS18485 aroF 3756534..3757604 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXX09_RS18490 tyrA 3757615..3758736 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXX09_RS18495 pheA 3758779..3759939 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXX09_RS18500 pheL 3760038..3760085 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CXX09_RS18505 raiA 3760189..3760530 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXX09_RS18510 comL 3760801..3761538 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXX09_RS18515 rluD 3761673..3762653 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXX09_RS18520 yfiH 3762650..3763381 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CXX09_RS18525 clpC 3763511..3766084 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220623 CXX09_RS18510 WP_000197686.1 3760801..3761538(-) (comL) [Escherichia coli strain 504211]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220623 CXX09_RS18510 WP_000197686.1 3760801..3761538(-) (comL) [Escherichia coli strain 504211]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment