Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CXX09_RS14460 Genome accession   NZ_CP025865
Coordinates   2992712..2993344 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 504211     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987712..2998344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX09_RS14435 yhfG 2987844..2988011 (+) 168 WP_000736860.1 YhfG family protein -
  CXX09_RS14440 fic 2988001..2988603 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CXX09_RS14445 pabA 2988635..2989198 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CXX09_RS14450 argD 2989284..2990504 (+) 1221 WP_001297516.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CXX09_RS14455 yhfK 2990571..2992661 (-) 2091 WP_001297515.1 YccS/YhfK family putative transporter -
  CXX09_RS14460 crp 2992712..2993344 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CXX09_RS14465 yhfA 2993646..2994050 (+) 405 WP_001148908.1 OsmC family protein -
  CXX09_RS14470 prkB 2994105..2994974 (-) 870 WP_001274680.1 phosphoribulokinase -
  CXX09_RS14475 yheU 2995028..2995246 (-) 219 WP_000907085.1 YheU family protein -
  CXX09_RS14480 yheT 2995240..2996262 (-) 1023 WP_000057405.1 hydrolase -
  CXX09_RS14485 yheS 2996262..2998175 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=220609 CXX09_RS14460 WP_000242755.1 2992712..2993344(-) (crp) [Escherichia coli strain 504211]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=220609 CXX09_RS14460 WP_000242755.1 2992712..2993344(-) (crp) [Escherichia coli strain 504211]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment