Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GTHT12_RS12775 | Genome accession | NZ_CP020030 |
| Coordinates | 2550223..2550519 (-) | Length | 98 a.a. |
| NCBI ID | WP_011887800.1 | Uniprot ID | A4IQW3 |
| Organism | Geobacillus thermodenitrificans strain T12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2545223..2555519
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTHT12_RS12740 (GTHT12_01932) | - | 2545794..2547458 (+) | 1665 | WP_011887795.1 | SNF2-related protein | - |
| GTHT12_RS12745 (GTHT12_01933) | - | 2547445..2548239 (+) | 795 | WP_011887796.1 | YqhG family protein | - |
| GTHT12_RS12750 (GTHT12_01934) | - | 2548316..2548495 (-) | 180 | WP_008879845.1 | YqzE family protein | - |
| GTHT12_RS12755 (GTHT12_01935) | comGG | 2548541..2548930 (-) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| GTHT12_RS12760 (GTHT12_01936) | comGF | 2549064..2549549 (-) | 486 | WP_011887798.1 | competence type IV pilus minor pilin ComGF | - |
| GTHT12_RS12765 (GTHT12_01937) | - | 2549486..2549812 (-) | 327 | WP_011887799.1 | hypothetical protein | - |
| GTHT12_RS12770 (GTHT12_01938) | comGD | 2549796..2550233 (-) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| GTHT12_RS12775 (GTHT12_01939) | comGC | 2550223..2550519 (-) | 297 | WP_011887800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GTHT12_RS12780 (GTHT12_01940) | comGB | 2550587..2551615 (-) | 1029 | WP_011887801.1 | competence type IV pilus assembly protein ComGB | - |
| GTHT12_RS12785 (GTHT12_01941) | comGA | 2551612..2552682 (-) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTHT12_RS12790 (GTHT12_01942) | - | 2552882..2553580 (+) | 699 | WP_008879853.1 | helix-turn-helix domain-containing protein | - |
| GTHT12_RS12795 (GTHT12_01943) | - | 2553744..2553986 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GTHT12_RS12800 (GTHT12_01944) | - | 2554017..2555144 (-) | 1128 | WP_087960149.1 | SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10855.74 Da Isoelectric Point: 6.2096
>NTDB_id=220532 GTHT12_RS12775 WP_011887800.1 2550223..2550519(-) (comGC) [Geobacillus thermodenitrificans strain T12]
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
Nucleotide
Download Length: 297 bp
>NTDB_id=220532 GTHT12_RS12775 WP_011887800.1 2550223..2550519(-) (comGC) [Geobacillus thermodenitrificans strain T12]
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.172 |
88.776 |
0.49 |
| comGC | Staphylococcus aureus MW2 |
41.935 |
94.898 |
0.398 |
| comGC | Staphylococcus aureus N315 |
41.935 |
94.898 |
0.398 |