Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXV92_RS08130 Genome accession   NZ_CP025859
Coordinates   1639304..1639819 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 504239     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634304..1644819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV92_RS08105 ygaZ 1634703..1635440 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CXV92_RS08110 ygaH 1635430..1635765 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  CXV92_RS08115 emrR 1635856..1636386 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXV92_RS08120 emrA 1636513..1637685 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXV92_RS08125 emrB 1637702..1639240 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXV92_RS08130 luxS 1639304..1639819 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CXV92_RS08135 gshA 1639969..1641525 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CXV92_RS08140 yqaA 1641598..1642026 (-) 429 WP_001287454.1 YqaA family protein -
  CXV92_RS08145 yqaB 1642023..1642589 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXV92_RS08175 csrA 1644047..1644232 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=220415 CXV92_RS08130 WP_001130211.1 1639304..1639819(-) (luxS) [Escherichia coli strain 504239]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220415 CXV92_RS08130 WP_001130211.1 1639304..1639819(-) (luxS) [Escherichia coli strain 504239]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment