Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXV92_RS07565 Genome accession   NZ_CP025859
Coordinates   1545437..1546174 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 504239     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540437..1551174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV92_RS07550 clpC 1540891..1543464 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CXV92_RS07555 yfiH 1543594..1544325 (-) 732 WP_000040112.1 purine nucleoside phosphorylase YfiH -
  CXV92_RS07560 rluD 1544322..1545302 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXV92_RS07565 comL 1545437..1546174 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXV92_RS07570 raiA 1546445..1546786 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXV92_RS07575 pheL 1546890..1546937 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CXV92_RS07580 pheA 1547036..1548196 (+) 1161 WP_000200139.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXV92_RS07585 tyrA 1548239..1549360 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXV92_RS07590 aroF 1549371..1550441 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXV92_RS07595 yfiL 1550651..1551016 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220413 CXV92_RS07565 WP_000197686.1 1545437..1546174(+) (comL) [Escherichia coli strain 504239]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220413 CXV92_RS07565 WP_000197686.1 1545437..1546174(+) (comL) [Escherichia coli strain 504239]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment