Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CXV93_RS16625 Genome accession   NZ_CP025856
Coordinates   3399759..3400391 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 504838     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3394759..3405391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV93_RS16600 yhfG 3394891..3395058 (+) 168 WP_000736860.1 YhfG family protein -
  CXV93_RS16605 fic 3395048..3395650 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CXV93_RS16610 pabA 3395682..3396245 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CXV93_RS16615 argD 3396331..3397551 (+) 1221 WP_000963766.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CXV93_RS16620 yhfK 3397618..3399708 (-) 2091 WP_001356072.1 YccS/YhfK family putative transporter -
  CXV93_RS16625 crp 3399759..3400391 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CXV93_RS16630 yhfA 3400693..3401097 (+) 405 WP_001148908.1 OsmC family protein -
  CXV93_RS16635 prkB 3401152..3402021 (-) 870 WP_001760337.1 phosphoribulokinase -
  CXV93_RS16640 yheU 3402075..3402293 (-) 219 WP_000907085.1 YheU family protein -
  CXV93_RS16645 yheT 3402287..3403309 (-) 1023 WP_000057405.1 hydrolase -
  CXV93_RS16650 yheS 3403309..3405222 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=220362 CXV93_RS16625 WP_000242755.1 3399759..3400391(-) (crp) [Escherichia coli strain 504838]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=220362 CXV93_RS16625 WP_000242755.1 3399759..3400391(-) (crp) [Escherichia coli strain 504838]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment