Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B2J85_RS11075 Genome accession   NZ_CP020017
Coordinates   2308680..2309183 (-) Length   167 a.a.
NCBI ID   WP_041591730.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain KUD23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2303680..2314183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J85_RS11055 dnaB 2304849..2306216 (-) 1368 WP_014123409.1 replicative DNA helicase -
  B2J85_RS11060 rplI 2306309..2306761 (-) 453 WP_014123408.1 50S ribosomal protein L9 -
  B2J85_RS11065 - 2306769..2308223 (-) 1455 WP_014123407.1 DHH family phosphoesterase -
  B2J85_RS11070 rpsR 2308417..2308656 (-) 240 WP_014123406.1 30S ribosomal protein S18 -
  B2J85_RS11075 ssb 2308680..2309183 (-) 504 WP_041591730.1 single-stranded DNA-binding protein Machinery gene
  B2J85_RS11080 rpsF 2309225..2309524 (-) 300 WP_014123404.1 30S ribosomal protein S6 -
  B2J85_RS11085 gyrA 2309769..2312234 (-) 2466 WP_014123403.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18493.16 Da        Isoelectric Point: 4.5093

>NTDB_id=220148 B2J85_RS11075 WP_041591730.1 2308680..2309183(-) (ssb) [Tetragenococcus halophilus strain KUD23]
MINNVVLVGRLTKDPDLRYTSNGVAVATFTLAVNRTFTNQNGEREADFINCVIWRKAAENLANLGRKGALIGATGRIQTR
NYENQQGQRVFVTEVVAENFQLLEPRSVSEQRRSADNDSVGGNQSNFGNSYNQTQTSQTPETPNFDRDNNDPFGGSSIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=220148 B2J85_RS11075 WP_041591730.1 2308680..2309183(-) (ssb) [Tetragenococcus halophilus strain KUD23]
TTGATTAACAACGTTGTACTAGTAGGAAGATTGACAAAAGACCCTGATTTACGTTACACCTCTAATGGCGTAGCAGTTGC
TACTTTTACTTTAGCCGTGAATCGTACATTTACGAATCAAAATGGTGAAAGGGAAGCGGATTTTATTAACTGTGTCATTT
GGAGAAAGGCTGCGGAAAATCTCGCAAATTTAGGACGTAAAGGCGCGTTAATTGGCGCCACTGGAAGAATTCAGACAAGA
AATTACGAAAATCAACAAGGACAACGTGTTTTTGTAACTGAAGTTGTGGCAGAAAATTTCCAATTATTGGAACCTCGTTC
TGTCAGTGAGCAACGTCGTTCTGCTGATAATGACTCTGTTGGTGGCAATCAATCGAACTTTGGGAACAGTTATAATCAAA
CACAAACATCTCAAACTCCTGAAACACCTAATTTTGATCGTGATAACAACGATCCTTTTGGCGGATCATCAATTGATATT
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.629
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.989

100

0.629
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389

Multiple sequence alignment