Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OTEC02_RS17595 Genome accession   NZ_CP020015
Coordinates   3708574..3709986 (+) Length   470 a.a.
NCBI ID   WP_081175509.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3703574..3714986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS17575 (OTEC02_17575) thrC 3703824..3704963 (+) 1140 WP_002048893.1 threonine synthase -
  OTEC02_RS17580 (OTEC02_17580) pbpG 3705076..3706122 (-) 1047 WP_155859233.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OTEC02_RS17585 (OTEC02_17585) - 3706335..3706970 (+) 636 WP_002121174.1 response regulator -
  OTEC02_RS17590 (OTEC02_17590) pilS 3706981..3708549 (+) 1569 WP_213033124.1 PAS domain-containing sensor histidine kinase Regulator
  OTEC02_RS17595 (OTEC02_17595) pilR 3708574..3709986 (+) 1413 WP_081175509.1 sigma-54 dependent transcriptional regulator Regulator
  OTEC02_RS17600 (OTEC02_17600) - 3709990..3711174 (-) 1185 WP_081175511.1 S41 family peptidase -
  OTEC02_RS17605 (OTEC02_17605) gpmI 3711190..3712737 (-) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OTEC02_RS17610 (OTEC02_17610) lptG 3712864..3713934 (-) 1071 WP_016144101.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52769.89 Da        Isoelectric Point: 6.3451

>NTDB_id=220111 OTEC02_RS17595 WP_081175509.1 3708574..3709986(+) (pilR) [Acinetobacter lactucae strain OTEC-02]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFDETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDVLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSEDECIDLTHLAPPLRASSVSPQIVTKQLN
QTPNIQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=220111 OTEC02_RS17595 WP_081175509.1 3708574..3709986(+) (pilR) [Acinetobacter lactucae strain OTEC-02]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCCCACACCCCCATT
GCAGTTTTAACTGCATACGGAAATATGGACATTGCAATTGCTGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAGGCGCTTAACCAGCCAAAACCAGAGCATGAGTTTGATGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCGCCTGTATTTGTTACAGGTGAGTCTGGTACGGGTAAAGAAGTTGTTGCCAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGGCCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCAACTCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGTTAACTATGCAGGTTAAATTGCTGCGGGCTGTGCAAGAGAAAAAGATACGTCCTGTAGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCGAGTCACCAAGATTTAGATGTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGCGGTGGAGATATTTTGCTA
TTGGCCAACCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGTGCTGAAACTTA
TTTATTACAGCAAGACTTTCCGGGTAATGTGCGTGAATTAAGAAATATGATTGAACGAGCTATTACTCTAAGTGAGGATG
AATGTATTGATTTAACACATTTAGCACCTCCCCTGAGAGCTAGTAGTGTGAGCCCGCAAATCGTAACGAAACAATTAAAT
CAAACACCAAATATTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCATTAAATATGACGCATTGGAATCGCACTTTGGCAGCTAAAAAGCTGGGAATGACATTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGTTTGGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.316

97.021

0.498

Multiple sequence alignment