Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OTEC02_RS17590 Genome accession   NZ_CP020015
Coordinates   3706981..3708549 (+) Length   522 a.a.
NCBI ID   WP_213033124.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3701981..3713549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS17570 (OTEC02_17570) - 3702468..3703769 (+) 1302 WP_016142448.1 homoserine dehydrogenase -
  OTEC02_RS17575 (OTEC02_17575) thrC 3703824..3704963 (+) 1140 WP_002048893.1 threonine synthase -
  OTEC02_RS17580 (OTEC02_17580) pbpG 3705076..3706122 (-) 1047 WP_155859233.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OTEC02_RS17585 (OTEC02_17585) - 3706335..3706970 (+) 636 WP_002121174.1 response regulator -
  OTEC02_RS17590 (OTEC02_17590) pilS 3706981..3708549 (+) 1569 WP_213033124.1 PAS domain-containing sensor histidine kinase Regulator
  OTEC02_RS17595 (OTEC02_17595) pilR 3708574..3709986 (+) 1413 WP_081175509.1 sigma-54 dependent transcriptional regulator Regulator
  OTEC02_RS17600 (OTEC02_17600) - 3709990..3711174 (-) 1185 WP_081175511.1 S41 family peptidase -
  OTEC02_RS17605 (OTEC02_17605) gpmI 3711190..3712737 (-) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59023.68 Da        Isoelectric Point: 6.6848

>NTDB_id=220110 OTEC02_RS17590 WP_213033124.1 3706981..3708549(+) (pilS) [Acinetobacter lactucae strain OTEC-02]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATKQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYHIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIHIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKILFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=220110 OTEC02_RS17590 WP_213033124.1 3706981..3708549(+) (pilS) [Acinetobacter lactucae strain OTEC-02]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAAGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTACTATATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAACAGCGCCTTA
TTGGCTTTCTTGTTTTTCGTGGTACACGGCATCGGACAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCACTGACTTT
CCACCAATCAATAGAACTCTATCAATTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACCACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTAGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAATCTAAAAGAAGGTGATCGTTTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACGCTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTGTCAGCAAGT
ATTGCCCATGAAATCCGTAATCCTCTTGCAGCGATTGTGCAAGCAAATGAACTACTTAAAGACAGTGATTTAGAACAACA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTTCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCACATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGCTCTGATTTATCTTTAAAGATATTGTTTGATGAAAAGCAGCTCAGACAAGTGCTGATTAA
CCTAGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCCTATGTTCTGATCAATATTCATTCACAAACAAATAAAA
TCTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCTTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.678

100

0.937

Multiple sequence alignment