Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OTEC02_RS15880 Genome accession   NZ_CP020015
Coordinates   3343432..3343836 (-) Length   134 a.a.
NCBI ID   WP_081175237.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain OTEC-02     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3338432..3348836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS15850 (OTEC02_15850) - 3338516..3338785 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OTEC02_RS15855 (OTEC02_15855) rapZ 3338782..3339633 (-) 852 WP_005066272.1 RNase adapter RapZ -
  OTEC02_RS15860 (OTEC02_15860) panC 3339657..3340505 (-) 849 WP_031947380.1 pantoate--beta-alanine ligase -
  OTEC02_RS15865 (OTEC02_15865) panB 3340509..3341318 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OTEC02_RS15870 (OTEC02_15870) folK 3341364..3341846 (-) 483 WP_081175234.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OTEC02_RS15875 (OTEC02_15875) pcnB 3341843..3343306 (-) 1464 WP_016144357.1 polynucleotide adenylyltransferase PcnB -
  OTEC02_RS15880 (OTEC02_15880) comEA 3343432..3343836 (-) 405 WP_081175237.1 ComEA family DNA-binding protein Machinery gene
  OTEC02_RS15885 (OTEC02_15885) mazG 3343805..3344611 (-) 807 WP_081175239.1 nucleoside triphosphate pyrophosphohydrolase -
  OTEC02_RS15890 (OTEC02_15890) - 3344724..3345497 (+) 774 WP_081175241.1 SDR family oxidoreductase -
  OTEC02_RS15895 (OTEC02_15895) - 3345546..3347852 (-) 2307 WP_081175243.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15413.60 Da        Isoelectric Point: 10.4458

>NTDB_id=220100 OTEC02_RS15880 WP_081175237.1 3343432..3343836(-) (comEA) [Acinetobacter lactucae strain OTEC-02]
MQLSMNLWKNKHYIFITLFWSLISSSFVQAQSFDQNFREWKAKQQIYDQKLSMQHSSHSSVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=220100 OTEC02_RS15880 WP_081175237.1 3343432..3343836(-) (comEA) [Acinetobacter lactucae strain OTEC-02]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTACTCTATTTTGGAGCCTGATTTCATCAAGCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAGGGAGTGGAAGGCTAAGCAACAGATATACGATCAGAAGTTGAGTATGC
AACATTCCTCTCATTCTAGTGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

44.355

92.537

0.41

Multiple sequence alignment