Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OTEC02_RS13160 Genome accession   NZ_CP020015
Coordinates   2760778..2761485 (+) Length   235 a.a.
NCBI ID   WP_016141682.1    Uniprot ID   A0A151YV95
Organism   Acinetobacter lactucae strain OTEC-02     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2755778..2766485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS13135 (OTEC02_13135) clpB 2755931..2758510 (-) 2580 WP_081174780.1 ATP-dependent chaperone ClpB -
  OTEC02_RS13140 (OTEC02_13140) - 2758810..2759619 (+) 810 WP_081174782.1 peptidoglycan DD-metalloendopeptidase family protein -
  OTEC02_RS13145 (OTEC02_13145) - 2759616..2759821 (-) 206 Protein_2550 hypothetical protein -
  OTEC02_RS13150 (OTEC02_13150) - 2759917..2760339 (-) 423 WP_016143298.1 OsmC family protein -
  OTEC02_RS13155 (OTEC02_13155) - 2760418..2760537 (-) 120 WP_078224862.1 hypothetical protein -
  OTEC02_RS13160 (OTEC02_13160) crp 2760778..2761485 (+) 708 WP_016141682.1 cAMP-activated global transcriptional regulator CRP Regulator
  OTEC02_RS13165 (OTEC02_13165) - 2761645..2762694 (+) 1050 WP_081174784.1 NADP(H)-dependent aldo-keto reductase -
  OTEC02_RS13170 (OTEC02_13170) - 2762750..2763529 (-) 780 WP_016143296.1 M48 family metallopeptidase -
  OTEC02_RS13175 (OTEC02_13175) - 2763645..2763962 (-) 318 WP_016143295.1 hypothetical protein -
  OTEC02_RS13180 (OTEC02_13180) - 2764084..2765403 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26522.10 Da        Isoelectric Point: 4.6573

>NTDB_id=220096 OTEC02_RS13160 WP_016141682.1 2760778..2761485(+) (crp) [Acinetobacter lactucae strain OTEC-02]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENPVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=220096 OTEC02_RS13160 WP_016141682.1 2760778..2761485(+) (crp) [Acinetobacter lactucae strain OTEC-02]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCAGACCTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACACGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGTCGTATTGCTCGTTGTTTAATCGAT
CTATCTTCTCAGCCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGCTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCTTCATTAGAAGAAAACCCTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YV95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment