Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BV140_RS03010 Genome accession   NZ_CP020013
Coordinates   593694..594491 (-) Length   265 a.a.
NCBI ID   WP_005686900.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 6P32H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 588694..599491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV140_RS02980 (BV140_608) nfuA 589541..590137 (-) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  BV140_RS02985 (BV140_609) - 590213..590899 (-) 687 WP_005686895.1 ComF family protein -
  BV140_RS02990 (BV140_610) comE 590912..592249 (-) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  BV140_RS02995 (BV140_611) comD 592259..592672 (-) 414 WP_005686898.1 pilus assembly protein PilP Machinery gene
  BV140_RS03000 (BV140_612) comC 592669..593190 (-) 522 WP_005686899.1 competence protein ComC Machinery gene
  BV140_RS03005 (BV140_613) comB 593187..593693 (-) 507 WP_005649305.1 competence protein ComB Machinery gene
  BV140_RS03010 (BV140_614) comA 593694..594491 (-) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  BV140_RS03015 (BV140_615) - 594590..597184 (+) 2595 WP_005686901.1 penicillin-binding protein 1A -
  BV140_RS03020 (BV140_616) - 597260..598105 (+) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV140_RS03025 (BV140_617) - 598258..598587 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  BV140_RS03030 (BV140_618) recR 598720..599322 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31601.99 Da        Isoelectric Point: 6.2348

>NTDB_id=220014 BV140_RS03010 WP_005686900.1 593694..594491(-) (comA) [Haemophilus influenzae strain 6P32H1]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPTHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=220014 BV140_RS03010 WP_005686900.1 593694..594491(-) (comA) [Haemophilus influenzae strain 6P32H1]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCACTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment