Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV140_RS02995 | Genome accession | NZ_CP020013 |
| Coordinates | 592259..592672 (-) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 6P32H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 587259..597672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV140_RS02965 (BV140_605) | - | 587642..587914 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| BV140_RS02970 (BV140_606) | - | 588054..588644 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| BV140_RS02975 (BV140_607) | nudC | 588680..589474 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| BV140_RS02980 (BV140_608) | nfuA | 589541..590137 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BV140_RS02985 (BV140_609) | - | 590213..590899 (-) | 687 | WP_005686895.1 | ComF family protein | - |
| BV140_RS02990 (BV140_610) | comE | 590912..592249 (-) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BV140_RS02995 (BV140_611) | comD | 592259..592672 (-) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| BV140_RS03000 (BV140_612) | comC | 592669..593190 (-) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| BV140_RS03005 (BV140_613) | comB | 593187..593693 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BV140_RS03010 (BV140_614) | comA | 593694..594491 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BV140_RS03015 (BV140_615) | - | 594590..597184 (+) | 2595 | WP_005686901.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=220011 BV140_RS02995 WP_005686898.1 592259..592672(-) (comD) [Haemophilus influenzae strain 6P32H1]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=220011 BV140_RS02995 WP_005686898.1 592259..592672(-) (comD) [Haemophilus influenzae strain 6P32H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |