Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   BV134_RS05490 Genome accession   NZ_CP020011
Coordinates   1094201..1094548 (+) Length   115 a.a.
NCBI ID   WP_050822911.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P56H1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089201..1099548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV134_RS05475 (BV134_1109) - 1090947..1092506 (+) 1560 WP_050822913.1 phosphoethanolamine transferase -
  BV134_RS05480 (BV134_1110) lspA 1092576..1093091 (+) 516 WP_050822912.1 signal peptidase II -
  BV134_RS05485 (BV134_1111) ispH 1093088..1094032 (+) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BV134_RS05490 (BV134_1112) comE1/comEA 1094201..1094548 (+) 348 WP_050822911.1 helix-hairpin-helix domain-containing protein Machinery gene
  BV134_RS05495 (BV134_1113) thiB 1094795..1095793 (+) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  BV134_RS05500 (BV134_1114) thiP 1095798..1097414 (+) 1617 WP_050822910.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  BV134_RS05505 (BV134_1115) thiQ 1097398..1098033 (+) 636 WP_050822909.1 thiamine ABC transporter ATP-binding protein -
  BV134_RS05510 (BV134_1116) bioB 1098158..1099159 (+) 1002 WP_050822908.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12478.40 Da        Isoelectric Point: 9.0428

>NTDB_id=219957 BV134_RS05490 WP_050822911.1 1094201..1094548(+) (comE1/comEA) [Haemophilus influenzae strain 67P56H1]
MKLMKTLFTSFVLCGSLAAGSTFAENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=219957 BV134_RS05490 WP_050822911.1 1094201..1094548(+) (comE1/comEA) [Haemophilus influenzae strain 67P56H1]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

81.25

97.391

0.791
  comEA/comE1 Glaesserella parasuis strain SC1401

57.944

93.043

0.539
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment