Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV131_RS02470 | Genome accession | NZ_CP020010 |
| Coordinates | 499293..499706 (-) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 67P38H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 494293..504706
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV131_RS02440 (BV131_504) | - | 494676..494948 (-) | 273 | WP_014550417.1 | HU family DNA-binding protein | - |
| BV131_RS02445 (BV131_505) | - | 495088..495678 (-) | 591 | WP_005656455.1 | YjaG family protein | - |
| BV131_RS02450 (BV131_506) | nudC | 495714..496508 (-) | 795 | WP_014550416.1 | NAD(+) diphosphatase | - |
| BV131_RS02455 (BV131_507) | nfuA | 496575..497171 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BV131_RS02460 (BV131_508) | - | 497247..497933 (-) | 687 | WP_050822809.1 | ComF family protein | - |
| BV131_RS02465 (BV131_509) | comE | 497946..499283 (-) | 1338 | WP_005686897.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BV131_RS02470 (BV131_510) | comD | 499293..499706 (-) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| BV131_RS02475 (BV131_511) | comC | 499703..500224 (-) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| BV131_RS02480 (BV131_512) | comB | 500221..500727 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BV131_RS02485 (BV131_513) | comA | 500728..501525 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BV131_RS02490 (BV131_514) | - | 501624..504218 (+) | 2595 | WP_050822811.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=219901 BV131_RS02470 WP_005686898.1 499293..499706(-) (comD) [Haemophilus influenzae strain 67P38H1]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=219901 BV131_RS02470 WP_005686898.1 499293..499706(-) (comD) [Haemophilus influenzae strain 67P38H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |