Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BV131_RS01770 Genome accession   NZ_CP020010
Coordinates   366562..367254 (-) Length   230 a.a.
NCBI ID   WP_050822711.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P38H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361562..372254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV131_RS01735 (BV131_357) - 363134..363340 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV131_RS01740 (BV131_358) - 363426..363632 (-) 207 WP_012054944.1 heavy-metal-associated domain-containing protein -
  BV131_RS01745 (BV131_359) - 363718..363924 (-) 207 WP_012054944.1 heavy-metal-associated domain-containing protein -
  BV131_RS01750 (BV131_360) - 363998..364204 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV131_RS01755 (BV131_361) cueR 364281..364667 (+) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  BV131_RS01760 (BV131_362) metJ 364681..364998 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  BV131_RS01765 (BV131_363) rho 365246..366508 (+) 1263 WP_005666690.1 transcription termination factor Rho -
  BV131_RS01770 (BV131_364) pilD 366562..367254 (-) 693 WP_050822711.1 prepilin peptidase Machinery gene
  BV131_RS01775 (BV131_365) pilC 367251..368471 (-) 1221 WP_042601844.1 type II secretion system F family protein Machinery gene
  BV131_RS01780 (BV131_366) pilB 368468..369865 (-) 1398 WP_042601843.1 GspE/PulE family protein Machinery gene
  BV131_RS01785 pilA 369862..370311 (-) 450 WP_042601842.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV131_RS01790 (BV131_368) ampD 370426..370986 (+) 561 WP_005648974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26626.62 Da        Isoelectric Point: 8.8544

>NTDB_id=219892 BV131_RS01770 WP_050822711.1 366562..367254(-) (pilD) [Haemophilus influenzae strain 67P38H1]
MIYFTMFLLGGIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLPFQSSVSSIQQKKCSHILRYFLSVGVGFIFLQIAF
KDSIFTVWLGATLLILWAISYLDWHYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSVASFFIVFYAIYWLAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFLPFAPFMNLSAIIIYLVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=219892 BV131_RS01770 WP_050822711.1 366562..367254(-) (pilD) [Haemophilus influenzae strain 67P38H1]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGCCATTTCAGTCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCAGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGCTAGGAGCCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGTTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGTGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGCTTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTTTACCTTTTGCCCCTT
TTATGAATTTATCGGCTATCATCATTTATCTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90.435

100

0.904
  pilD Haemophilus influenzae Rd KW20

90

100

0.9

Multiple sequence alignment