Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CV83906_RS17745 Genome accession   NZ_CP025753
Coordinates   3237419..3238156 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CV839-06     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3232419..3243156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV83906_RS17710 (CV83906_3237) yfiL 3232577..3232942 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CV83906_RS17715 (CV83906_3238) aroF 3233152..3234222 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CV83906_RS17720 (CV83906_3239) tyrA 3234233..3235354 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CV83906_RS17725 (CV83906_3240) pheA 3235397..3236557 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  CV83906_RS17730 pheL 3236656..3236703 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  CV83906_RS17735 (CV83906_3241) raiA 3236807..3237148 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CV83906_RS17745 (CV83906_3242) comL 3237419..3238156 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CV83906_RS17750 (CV83906_3243) rluD 3238291..3239271 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CV83906_RS17755 (CV83906_3244) yfiH 3239268..3239999 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  CV83906_RS17760 (CV83906_3245) clpC 3240129..3242702 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=219882 CV83906_RS17745 WP_000197686.1 3237419..3238156(-) (comL) [Escherichia coli strain CV839-06]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=219882 CV83906_RS17745 WP_000197686.1 3237419..3238156(-) (comL) [Escherichia coli strain CV839-06]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment