Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BV083_RS02690 | Genome accession | NZ_CP020006 |
| Coordinates | 547838..548251 (-) | Length | 137 a.a. |
| NCBI ID | WP_005686898.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 48P106H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 542838..553251
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV083_RS02660 (BV083_545) | - | 543221..543493 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| BV083_RS02665 (BV083_546) | - | 543633..544223 (-) | 591 | WP_005686892.1 | YjaG family protein | - |
| BV083_RS02670 (BV083_547) | nudC | 544259..545053 (-) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| BV083_RS02675 (BV083_548) | nfuA | 545120..545716 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| BV083_RS02680 (BV083_549) | - | 545792..546478 (-) | 687 | WP_005686895.1 | ComF family protein | - |
| BV083_RS02685 (BV083_550) | comE | 546491..547828 (-) | 1338 | WP_105210537.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BV083_RS02690 (BV083_551) | comD | 547838..548251 (-) | 414 | WP_005686898.1 | pilus assembly protein PilP | Machinery gene |
| BV083_RS02695 (BV083_552) | comC | 548248..548769 (-) | 522 | WP_005686899.1 | competence protein ComC | Machinery gene |
| BV083_RS02700 (BV083_553) | comB | 548766..549272 (-) | 507 | WP_005649305.1 | competence protein ComB | Machinery gene |
| BV083_RS02705 (BV083_554) | comA | 549273..550070 (-) | 798 | WP_005686900.1 | pilus assembly protein PilM | Machinery gene |
| BV083_RS02710 (BV083_555) | - | 550169..552763 (+) | 2595 | WP_005686901.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15677.82 Da Isoelectric Point: 4.5625
>NTDB_id=219760 BV083_RS02690 WP_005686898.1 547838..548251(-) (comD) [Haemophilus influenzae strain 48P106H1]
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=219760 BV083_RS02690 WP_005686898.1 547838..548251(-) (comD) [Haemophilus influenzae strain 48P106H1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCGTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |