Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BUM88_RS16195 Genome accession   NZ_CP020000
Coordinates   3368530..3368913 (-) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3363530..3373913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS16180 (BUM88_16180) - 3365424..3367505 (-) 2082 WP_017392491.1 methyl-accepting chemotaxis protein -
  BUM88_RS16185 (BUM88_16185) - 3367548..3368084 (-) 537 WP_080027720.1 chemotaxis protein CheW -
  BUM88_RS16190 (BUM88_16190) - 3368144..3368506 (-) 363 WP_005036319.1 response regulator -
  BUM88_RS16195 (BUM88_16195) pilG 3368530..3368913 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  BUM88_RS16200 (BUM88_16200) - 3369199..3369837 (+) 639 WP_213033724.1 hypothetical protein -
  BUM88_RS16205 (BUM88_16205) - 3369906..3371015 (+) 1110 WP_080028344.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=219733 BUM88_RS16195 WP_000389061.1 3368530..3368913(-) (pilG) [Acinetobacter calcoaceticus strain CA16]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=219733 BUM88_RS16195 WP_000389061.1 3368530..3368913(-) (pilG) [Acinetobacter calcoaceticus strain CA16]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTAATTGATGACTCAAAAACCATTCGCCGTACAGCCGAAACTTTATT
ACAGCGAGAAGGCTGTGAAGTGATTACTGCGGTGGATGGATTTGAAGCTTTGTCCAAAATTGCAGAAGCAAATCCAGATA
TTGTTTTTGTCGATATCATGATGCCTCGTTTAGATGGTTATCAAACTTGCGCTTTGATTAAAAACTCTCAAAATTATCAG
AATATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGTTAAACGCGATTCGTAATCACGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment