Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BUM88_RS05625 Genome accession   NZ_CP020000
Coordinates   1178983..1179690 (-) Length   235 a.a.
NCBI ID   WP_005041938.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173983..1184690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS05605 (BUM88_05605) - 1175065..1176384 (+) 1320 WP_003652692.1 adenylosuccinate synthase -
  BUM88_RS05610 (BUM88_05610) - 1176506..1176823 (+) 318 WP_005041944.1 hypothetical protein -
  BUM88_RS05615 (BUM88_05615) - 1176940..1177719 (+) 780 WP_080026580.1 M48 family metallopeptidase -
  BUM88_RS05620 (BUM88_05620) - 1177774..1178823 (-) 1050 WP_080026581.1 NADP(H)-dependent aldo-keto reductase -
  BUM88_RS05625 (BUM88_05625) crp 1178983..1179690 (-) 708 WP_005041938.1 cAMP-activated global transcriptional regulator CRP Regulator
  BUM88_RS20170 - 1179932..1179994 (+) 63 Protein_1076 hypothetical protein -
  BUM88_RS05630 (BUM88_05630) - 1180130..1180552 (+) 423 WP_005041936.1 OsmC family protein -
  BUM88_RS05635 (BUM88_05635) - 1180644..1181069 (+) 426 WP_080028219.1 GNAT family N-acetyltransferase -
  BUM88_RS05640 (BUM88_05640) - 1181066..1181875 (-) 810 WP_080026582.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26479.08 Da        Isoelectric Point: 4.6469

>NTDB_id=219724 BUM88_RS05625 WP_005041938.1 1178983..1179690(-) (crp) [Acinetobacter calcoaceticus strain CA16]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEDAPVSDDDYDDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=219724 BUM88_RS05625 WP_005041938.1 1178983..1179690(-) (crp) [Acinetobacter calcoaceticus strain CA16]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGCGAAGATGATGAACGTGAAATTGTTGTTGCATATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCAGACTTAAGTTATGCTGTTTTTGCACAACTCGTTCGCC
GTCTAAAAAATACGACCCGTAAGATGACAGATCTTGCATTTATCGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAC
CTATCTTCACAGCCAGAAGCAATGATTTTGCCAAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGTCGTATTGT
TGGATGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACTTTAGAAGATCAAGGCATGATCCAAACAGATGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGATGCACCTGTTTCTGATGACGACTATGATGATGACGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

48.223

83.83

0.404
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment