Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BUM88_RS01080 Genome accession   NZ_CP020000
Coordinates   226106..227524 (-) Length   472 a.a.
NCBI ID   WP_080026168.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 221106..232524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS01065 (BUM88_01065) lptG 222157..223227 (+) 1071 WP_003654431.1 LPS export ABC transporter permease LptG -
  BUM88_RS01070 (BUM88_01070) gpmI 223354..224901 (+) 1548 WP_080026166.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BUM88_RS01075 (BUM88_01075) - 224917..226101 (+) 1185 WP_080026167.1 S41 family peptidase -
  BUM88_RS01080 (BUM88_01080) pilR 226106..227524 (-) 1419 WP_080026168.1 sigma-54-dependent transcriptional regulator Regulator
  BUM88_RS01085 (BUM88_01085) pilS 227548..229116 (-) 1569 WP_213033741.1 sensor histidine kinase Regulator
  BUM88_RS01090 (BUM88_01090) - 229126..229761 (-) 636 WP_003654436.1 response regulator -
  BUM88_RS01095 (BUM88_01095) pbpG 229974..231020 (+) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BUM88_RS01100 (BUM88_01100) thrC 231127..232266 (-) 1140 WP_080026169.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52949.19 Da        Isoelectric Point: 6.1987

>NTDB_id=219709 BUM88_RS01080 WP_080026168.1 226106..227524(-) (pilR) [Acinetobacter calcoaceticus strain CA16]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSQTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVNSQIITKPVN
DTSTAIAQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=219709 BUM88_RS01080 WP_080026168.1 226106..227524(-) (pilR) [Acinetobacter calcoaceticus strain CA16]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTACCTGACGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTATTCTCAGACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCATTAAAGGCGGGAGCTTTTGATTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CGTTGGAAAATGACCTATTAATTGGACGTTCTCCGCCCATACAAAACCTACGTATTGCTATAAAAAAAATAGCTCGCTCC
CAAGCTCCTGTGTTTGTTACGGGGGAATCTGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGTTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATCAACTGTGGAGCAATTCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGTAGCTTTACTGGAGCTACCCAAGACAAACAAGGCCTTATTTTATCCGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCTGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGTCCAGTAGGTTCCGA
TCAGGAAATCGATGTTGATTTTCGGGTGATTAGCGCCAGCCACCAAGATTTAGAGTTATTAGTCCGACAAGGCAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTTATGGATATCATGTTGCCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCTAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACCACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCGATTACCTTAAGTGATGATG
AATGTATTGATTTAACACACTTAGCACCTCCTCTCAGAGGCAGTAGCGTTAACTCGCAAATCATAACTAAACCAGTGAAT
GACACATCAACTGCGATTGCTCAGACTCGACCAAAATTACCAATGGAAGGCTTAGAACGCTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCGTTGGACATGACACATTGGAACAGGACCTTAGCAGCTAAGAAGTTAGGAATGACCTTCCGTT
CTTTACGCTACCGATTGAAAAAGTTTGGCTTAGATACTGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.681

100

0.869
  pilR Pseudomonas aeruginosa PAK

50.655

97.034

0.492

Multiple sequence alignment