Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BUM88_RS01085 Genome accession   NZ_CP020000
Coordinates   227548..229116 (-) Length   522 a.a.
NCBI ID   WP_213033741.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 222548..234116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS01070 (BUM88_01070) gpmI 223354..224901 (+) 1548 WP_080026166.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BUM88_RS01075 (BUM88_01075) - 224917..226101 (+) 1185 WP_080026167.1 S41 family peptidase -
  BUM88_RS01080 (BUM88_01080) pilR 226106..227524 (-) 1419 WP_080026168.1 sigma-54-dependent transcriptional regulator Regulator
  BUM88_RS01085 (BUM88_01085) pilS 227548..229116 (-) 1569 WP_213033741.1 sensor histidine kinase Regulator
  BUM88_RS01090 (BUM88_01090) - 229126..229761 (-) 636 WP_003654436.1 response regulator -
  BUM88_RS01095 (BUM88_01095) pbpG 229974..231020 (+) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BUM88_RS01100 (BUM88_01100) thrC 231127..232266 (-) 1140 WP_080026169.1 threonine synthase -
  BUM88_RS01105 (BUM88_01105) - 232321..233622 (-) 1302 WP_004640662.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58882.44 Da        Isoelectric Point: 6.5602

>NTDB_id=219710 BUM88_RS01085 WP_213033741.1 227548..229116(-) (pilS) [Acinetobacter calcoaceticus strain CA16]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTSHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIQIELNGFIKTLLDEDLLDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=219710 BUM88_RS01085 WP_213033741.1 227548..229116(-) (pilS) [Acinetobacter calcoaceticus strain CA16]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACATTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTACAACTCAG
CTTGCTGTATGTTATTGCTATATTCACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCAG
TCATTGCTGTTATTTACCAACGCTTTGTTGGTAGTTTATTTGACTACAATAATCTAAATACAATTGGTAATAGTGCCTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGACAAATTGCTGTTCAGCGCTTTAAATTACTTGAGGCGCTAACTTC
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTCTGGAACAAATTGAAGAAGGCTATCTTGTTC
TAGATGAAAACTACGACATTGTTCTAAGTAATCCGGCTGCCTGCTCTCTGTTGGGCATTCCGCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACCCCGATCTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTGTCGGCTTACTCTATTAACATTAAAGTGCAGCATCTTGTGGTGCCGCAACAAGCATTGACGCTGC
TCATTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGGCAACTTTCAGCCAGT
ATTGCACATGAAATCCGTAATCCTCTGGCAGCAATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTTAGAGCAGCA
AAATACTTTACGCCGTATGATTGGCAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACCTTAGGTCTTGCCAGTA
GTGAAAGAACTCACCCAATCCAGATTGAATTAAACGGCTTCATAAAGACATTATTAGACGAAGATCTATTGGATGTTAAA
CATTCTATACAACTTAAAATATCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTAAGACAAGTGCTGATTAA
CCTTGTCAGGAATGCTTTACGACATAATGCCCCCGATTCACCCCACGTTCTGATCAATATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGCATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.912

100

0.929

Multiple sequence alignment