Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   YDC107_RS08780 Genome accession   NZ_CP025707
Coordinates   1772135..1772794 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain YDC107     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767135..1777794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YDC107_RS08755 (YDC107_1700) ygiS 1768418..1770025 (-) 1608 WP_001295629.1 ABC transporter substrate-binding protein -
  YDC107_RS08760 (YDC107_1701) mqsA 1770158..1770553 (-) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  YDC107_RS08765 (YDC107_1702) mqsR 1770555..1770851 (-) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  YDC107_RS08770 (YDC107_1703) ygiV 1771056..1771538 (-) 483 WP_000183505.1 GyrI-like domain-containing protein -
  YDC107_RS08775 (YDC107_1704) ygiW 1771591..1771983 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  YDC107_RS08780 (YDC107_1705) ciaR 1772135..1772794 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  YDC107_RS08785 (YDC107_1706) qseC 1772791..1774140 (+) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  YDC107_RS08790 ygiZ 1774186..1774518 (-) 333 WP_000917684.1 DUF2645 family protein -
  YDC107_RS28370 mdaB 1774837..1775418 (+) 582 Protein_1696 NADPH:quinone oxidoreductase MdaB -
  YDC107_RS08800 (YDC107_1709) ygiN 1775449..1775763 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  YDC107_RS08805 (YDC107_1710) parE 1775811..1777703 (-) 1893 WP_042348079.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=219690 YDC107_RS08780 WP_001221493.1 1772135..1772794(+) (ciaR) [Escherichia coli strain YDC107]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=219690 YDC107_RS08780 WP_001221493.1 1772135..1772794(+) (ciaR) [Escherichia coli strain YDC107]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365