Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BH100N_RS19485 Genome accession   NZ_CP025703
Coordinates   3796066..3796698 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain BH100N substr. MG2017     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3791066..3801698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100N_RS19455 (BH100N_03773) yheS 3791235..3793148 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  BH100N_RS19460 (BH100N_03774) yheT 3793148..3794170 (+) 1023 WP_000057389.1 hydrolase -
  BH100N_RS19465 (BH100N_03775) yheU 3794164..3794382 (+) 219 WP_000907085.1 YheU family protein -
  BH100N_RS19470 (BH100N_03776) prkB 3794436..3795305 (+) 870 WP_001274680.1 phosphoribulokinase -
  BH100N_RS19475 (BH100N_03777) yhfA 3795360..3795764 (-) 405 WP_001148908.1 OsmC family protein -
  BH100N_RS19485 (BH100N_03779) crp 3796066..3796698 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  BH100N_RS19490 (BH100N_03780) yhfK 3796749..3798839 (+) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  BH100N_RS19495 (BH100N_03781) argD 3798917..3800137 (-) 1221 WP_000963809.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  BH100N_RS19500 (BH100N_03782) pabA 3800223..3800786 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  BH100N_RS19505 (BH100N_03783) fic 3800818..3801420 (-) 603 WP_103294513.1 putative adenosine monophosphate-protein transferase Fic -
  BH100N_RS19510 (BH100N_03784) yhfG 3801410..3801577 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=219632 BH100N_RS19485 WP_000242755.1 3796066..3796698(+) (crp) [Escherichia coli strain BH100N substr. MG2017]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=219632 BH100N_RS19485 WP_000242755.1 3796066..3796698(+) (crp) [Escherichia coli strain BH100N substr. MG2017]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467