Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BC8716_RS06680 Genome accession   NZ_CP019985
Coordinates   1384903..1385385 (+) Length   160 a.a.
NCBI ID   WP_063608863.1    Uniprot ID   A0A268RW45
Organism   Shouchella clausii strain DSM 8716     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1379903..1390385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC8716_RS06655 (BC8716_06650) yyaC 1381055..1381687 (-) 633 WP_094424416.1 spore protease YyaC -
  BC8716_RS06660 (BC8716_06655) - 1381773..1382801 (+) 1029 WP_094424417.1 hypothetical protein -
  BC8716_RS06665 (BC8716_06660) - 1382865..1383059 (+) 195 WP_035205683.1 DUF951 domain-containing protein -
  BC8716_RS06670 (BC8716_06665) ychF 1383128..1384228 (+) 1101 WP_094424418.1 redox-regulated ATPase YchF -
  BC8716_RS06675 (BC8716_06670) rpsF 1384545..1384832 (+) 288 WP_011248940.1 30S ribosomal protein S6 -
  BC8716_RS06680 (BC8716_06675) ssbA 1384903..1385385 (+) 483 WP_063608863.1 single-stranded DNA-binding protein Machinery gene
  BC8716_RS06685 (BC8716_06680) rpsR 1385411..1385644 (+) 234 WP_011248938.1 30S ribosomal protein S18 -
  BC8716_RS06690 (BC8716_06685) - 1385849..1386751 (+) 903 WP_169715919.1 YybS family protein -
  BC8716_RS06695 (BC8716_06690) - 1386781..1388751 (+) 1971 WP_094424420.1 DHH family phosphoesterase -
  BC8716_RS06700 (BC8716_06695) rplI 1388748..1389191 (+) 444 WP_094424421.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17478.03 Da        Isoelectric Point: 4.6010

>NTDB_id=219559 BC8716_RS06680 WP_063608863.1 1384903..1385385(+) (ssbA) [Shouchella clausii strain DSM 8716]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGRRVFVTEVVAESVQFLEPRNSQNQSSGNPGFDQYGAGSQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=219559 BC8716_RS06680 WP_063608863.1 1384903..1385385(+) (ssbA) [Shouchella clausii strain DSM 8716]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAACGGTGTAGCTGTAGC
CAATTTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAAGGAGAACGAGAAGCTGACTTCATTAACTGTGTTGTCT
GGCGCAAACCGGCTGAGAATGTCGCCAATTTCCTTAAAAAAGGGAGCCTTGCAGGAGTCGACGGCCGTGTGCAAACGCGA
AGCTATGACAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAGTCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
TAGTCAAAACCAATCCTCTGGGAATCCTGGTTTTGATCAGTACGGCGCTGGCAGCCAAGGTTCTGGCAACCAAACTGGTG
GCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGATGATGATCTTCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268RW45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.023

100

0.731
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

66.25

0.406

Multiple sequence alignment