Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LS41612_RS00415 Genome accession   NZ_CP019980
Coordinates   95386..95958 (+) Length   190 a.a.
NCBI ID   WP_024364645.1    Uniprot ID   A0A4U2Z4N7
Organism   Lysinibacillus sphaericus strain DSM 28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 90386..100958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS41612_RS00385 (LS41612_00385) - 90546..91427 (+) 882 WP_024364639.1 mechanosensitive ion channel family protein -
  LS41612_RS00390 (LS41612_00390) - 91429..91629 (+) 201 WP_024364640.1 DUF951 domain-containing protein -
  LS41612_RS00395 (LS41612_00395) ychF 91985..93085 (+) 1101 WP_024364641.1 redox-regulated ATPase YchF -
  LS41612_RS00400 (LS41612_00400) - 93255..94295 (+) 1041 WP_024364642.1 acyl-CoA dehydrogenase family protein -
  LS41612_RS00405 (LS41612_00405) - 94322..94885 (-) 564 WP_024364643.1 DUF3267 domain-containing protein -
  LS41612_RS00410 (LS41612_00410) rpsF 95059..95349 (+) 291 WP_024364644.1 30S ribosomal protein S6 -
  LS41612_RS00415 (LS41612_00415) ssbA 95386..95958 (+) 573 WP_024364645.1 single-stranded DNA-binding protein Machinery gene
  LS41612_RS00420 (LS41612_00420) rpsR 96006..96242 (+) 237 WP_024364646.1 30S ribosomal protein S18 -
  LS41612_RS00425 (LS41612_00425) - 96561..97493 (+) 933 WP_137034864.1 hypothetical protein -
  LS41612_RS00430 (LS41612_00430) - 97490..98776 (+) 1287 WP_024364648.1 hypothetical protein -
  LS41612_RS00435 (LS41612_00435) - 98769..99434 (+) 666 WP_051147788.1 ABC transporter ATP-binding protein -
  LS41612_RS00440 (LS41612_00440) - 99721..100662 (+) 942 WP_024364650.1 YybS family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20599.61 Da        Isoelectric Point: 4.9533

>NTDB_id=219485 LS41612_RS00415 WP_024364645.1 95386..95958(+) (ssbA) [Lysinibacillus sphaericus strain DSM 28]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGASYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=219485 LS41612_RS00415 WP_024364645.1 95386..95958(+) (ssbA) [Lysinibacillus sphaericus strain DSM 28]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTGAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGCGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCGAACCAATACGGCGGACAATCTTACGCTAATAGCCAGCCGTCATATGGCGGTGGACAAC
CACAACAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTGCTTCTTATCAGCAAAATCAACCACCA
ATGAATCAGCCGAACTATACACGAGTAGACGAAGATCCATTTGCGAATAGCAAGGGACCGATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2Z4N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.737

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

48.969

100

0.5

Multiple sequence alignment