Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   C0J56_RS29510 Genome accession   NZ_CP025542
Coordinates   6478116..6480191 (+) Length   691 a.a.
NCBI ID   WP_134926430.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6473116..6485191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS29485 (C0J56_29480) - 6473769..6474626 (-) 858 WP_134926421.1 SDR family oxidoreductase -
  C0J56_RS29490 (C0J56_29485) exbB 6474814..6475815 (+) 1002 WP_134926422.1 tonB-system energizer ExbB -
  C0J56_RS29495 (C0J56_29490) exbD 6475822..6476250 (+) 429 WP_134926424.1 TonB system transport protein ExbD -
  C0J56_RS29500 (C0J56_29495) - 6476247..6477002 (+) 756 WP_134926426.1 energy transducer TonB -
  C0J56_RS29505 (C0J56_29500) - 6477186..6478106 (+) 921 WP_134926428.1 hydrogen peroxide-inducible genes activator -
  C0J56_RS29510 (C0J56_29505) recG 6478116..6480191 (+) 2076 WP_134926430.1 ATP-dependent DNA helicase RecG Machinery gene
  C0J56_RS29515 (C0J56_29510) - 6480271..6481671 (+) 1401 WP_003206896.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  C0J56_RS29520 (C0J56_29515) - 6481741..6482937 (-) 1197 WP_167659369.1 hypothetical protein -
  C0J56_RS29525 - 6482903..6483100 (-) 198 WP_134926433.1 hypothetical protein -
  C0J56_RS29530 (C0J56_29520) - 6483246..6483629 (-) 384 WP_134926435.1 helicase -
  C0J56_RS29535 (C0J56_29525) - 6484158..6484538 (+) 381 WP_134926437.1 DUF6124 family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76153.67 Da        Isoelectric Point: 6.8453

>NTDB_id=219407 C0J56_RS29510 WP_134926430.1 6478116..6480191(+) (recG) [Pseudomonas fluorescens strain 2P24]
MTELSKVPVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGHLRPGQDAVIEGTVSGADVVMGRRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRVRCYGEARPGASGLEIYHPEYRSITGDEPPPVDETLTPVYPLTEGLTQQR
LRQLCQQTLTLLGPSSLPDWLPTELARDYQLAPLADAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESLRSLRAPAMPKARDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKLKGKNRTAALAQIAEGAPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRIEVIERVRSACAE
GRQAYWVCTLIEESEELTCQAAETTYEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGALQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPDHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=219407 C0J56_RS29510 WP_134926430.1 6478116..6480191(+) (recG) [Pseudomonas fluorescens strain 2P24]
ATGACTGAGCTGTCGAAAGTGCCGGTCACGGCACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAATTGGCCAAGGTCGG
CCTGGAAAATCTCCAGGACGTGCTGTTCCACCTGCCCCTGCGTTACCAGGACCGCACCCGCGTAGTACCCATCGGCCATT
TGCGCCCTGGGCAGGACGCGGTGATCGAAGGCACCGTCAGCGGCGCCGACGTGGTCATGGGCCGGCGCCGCAGCCTGGTG
GTGCGCCTGCAGGACGGCACCGGCGGGCTCAGCCTGCGCTTCTATCACTTCAGCAATGCGCAAAAGGAAGGCCTCAAGCG
CGGCACCCGCGTGCGCTGCTACGGTGAAGCACGGCCCGGCGCGTCGGGGCTGGAGATCTATCACCCGGAATATCGCAGCA
TCACCGGCGACGAGCCACCACCCGTGGACGAAACCCTGACCCCGGTCTATCCACTCACCGAAGGCCTGACCCAACAACGC
CTGCGCCAGCTCTGCCAGCAAACCCTGACGCTGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCCACGGAGCTGGCCCG
GGATTACCAACTGGCGCCATTGGCCGATGCGATCCGCTACCTGCACCACCCGCCCGCCGATGCCGATGTCGACGAACTCG
CCCTCGGCCATCACTGGGCCCAGCATCGGTTGGCCTTTGAAGAGTTGCTGACCCATCAACTGTCGCAGCAACGCCTGCGG
GAAAGCCTGCGCTCCCTGCGCGCCCCGGCCATGCCCAAGGCCCGGGATCTACCGGCCCGCTACCTGGCCAACCTCGGTTT
CACCCCCACGGGTGCCCAACAACGGGTCGGCAACGAAATCGCCTACGACCTGAGCCAGCCAGAGCCCATGCTGCGGCTGA
TCCAGGGCGATGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCGCTCCAGGCTCTGGAGGCGGGTTACCAGGTG
GCGTTGATGGCGCCCACCGAGATTCTCGCCGAACAACATTTCATCACCTTCCAGCGCTGGCTCGAACCCTTAGGTATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGAATCGCACAGCCGCCCTGGCACAGATCGCCGAAGGCGCACCGATGG
TGGTAGGCACCCATGCCTTGTTCCAGGACGAAGTGCAGTTCAAGAACCTGGCGTTGGTGATCATCGACGAACAGCACCGC
TTCGGCGTACAGCAACGCCTGGCCCTGCGGCAGAAAGGCGTGGGCGGGCGGATGTGTCCGCATCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCCATGAGCGCCTACGCCGACCTCGACACCTCGATCCTCGACGAACTGCCGCCGGGTC
GTACACCGGTCAATACCGTGCTGGTCACCGATACCCGACGAATCGAAGTGATCGAGCGCGTGCGCAGCGCCTGCGCCGAA
GGGCGCCAGGCCTACTGGGTATGTACGCTGATCGAGGAATCGGAAGAACTGACCTGCCAGGCCGCTGAAACCACCTATGA
AGACCTCACCGCCGCCCTCGGCGAGTTGAAGGTCGGGCTGATCCACGGGCGCATGAAACCCGCCGAGAAGGCCGCCGTCA
TGGCCGAGTTCAAGGCCGGCGCCCTGCAATTGCTGGTCGCCACCACGGTGATCGAGGTCGGTGTGGATGTGCCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTGGGCCTGGCGCAGTTGCACCAGTTGCGCGGCCGCGTCGGTCGGGGCAG
CGCCGCCAGCCATTGCGTACTGCTGTATCACCCGCCACTGTCGCAGATCGGTCGGCAGCGGCTGGGCATCATGCGCGAAA
CCAACGACGGCTTCGTCATCGCCGAAAAAGACCTCGAATTGCGCGGCCCCGGCGAAATGCTCGGCACGCGCCAGACCGGT
CTGCTTCAATTCAAGGTAGCCGACCTGATGCGCGACGCCGATCTGCTCCCCGCCGTACGCGACGCCGCCCAGGCGCTACT
GGAACGCTGGCCCGACCACGTCAGCCCGCTGCTGGATCGCTGGCTGCGTCATGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-171)

DEAD/DEAH box helicase (DEAD)

(293-408)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.592

97.829

0.495
  recG/mmsA Streptococcus pneumoniae R6

39.853

98.408

0.392
  recG/mmsA Streptococcus pneumoniae R36A

39.853

98.408

0.392
  recG Bacillus subtilis subsp. subtilis str. 168

39.673

97.395

0.386

Multiple sequence alignment