Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | C0J56_RS28240 | Genome accession | NZ_CP025542 |
| Coordinates | 6231190..6231555 (-) | Length | 121 a.a. |
| NCBI ID | WP_003206465.1 | Uniprot ID | A0ABM6R9F4 |
| Organism | Pseudomonas fluorescens strain 2P24 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6226190..6236555
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0J56_RS28230 (C0J56_28220) | - | 6228371..6230431 (-) | 2061 | WP_134926217.1 | methyl-accepting chemotaxis protein | - |
| C0J56_RS28235 (C0J56_28225) | - | 6230640..6231179 (-) | 540 | WP_134926218.1 | chemotaxis protein CheW | - |
| C0J56_RS28240 (C0J56_28230) | pilH | 6231190..6231555 (-) | 366 | WP_003206465.1 | twitching motility response regulator PilH | Machinery gene |
| C0J56_RS28245 (C0J56_28235) | pilG | 6231604..6232029 (-) | 426 | WP_109752380.1 | twitching motility response regulator PilG | Regulator |
| C0J56_RS28250 (C0J56_28240) | gshB | 6232253..6233206 (+) | 954 | WP_134926219.1 | glutathione synthase | - |
| C0J56_RS28255 (C0J56_28245) | - | 6233283..6234179 (+) | 897 | WP_134926220.1 | energy transducer TonB | - |
| C0J56_RS28260 (C0J56_28250) | - | 6234404..6234973 (+) | 570 | WP_134926221.1 | YqgE/AlgH family protein | - |
| C0J56_RS28265 (C0J56_28255) | ruvX | 6234973..6235410 (+) | 438 | WP_134926222.1 | Holliday junction resolvase RuvX | - |
| C0J56_RS28270 (C0J56_28260) | pyrR | 6235496..6236002 (+) | 507 | WP_134926223.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13224.19 Da Isoelectric Point: 5.1588
>NTDB_id=219397 C0J56_RS28240 WP_003206465.1 6231190..6231555(-) (pilH) [Pseudomonas fluorescens strain 2P24]
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDPDTGHIPVII
ITTKDQDTDKVWGTRQGAKDYLTKPVDEETLIATLNKVLAG
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDPDTGHIPVII
ITTKDQDTDKVWGTRQGAKDYLTKPVDEETLIATLNKVLAG
Nucleotide
Download Length: 366 bp
>NTDB_id=219397 C0J56_RS28240 WP_003206465.1 6231190..6231555(-) (pilH) [Pseudomonas fluorescens strain 2P24]
ATGGCACGAGTTCTGATCGTCGATGATTCGCCGACTGAAATGTACAAACTGACCGGTATGCTGGAAAAACACGGCCATCA
GGTCCTGAAGGCCGAGAACGGCGCCGATGGCGTGGCTCTGGCCCGCCAGGAAAAACCCGACGCGGTACTGATGGACATCG
TCATGCCCGGTCTCAACGGTTTCCAGGCCACGCGCCAGTTGACCAAGGATCCGGACACCGGCCACATCCCGGTGATCATC
ATCACTACCAAGGACCAGGACACCGACAAGGTCTGGGGTACGCGCCAAGGCGCGAAGGACTACCTGACCAAGCCGGTGGA
CGAAGAAACCCTGATCGCGACCCTGAACAAAGTGCTGGCGGGTTGA
ATGGCACGAGTTCTGATCGTCGATGATTCGCCGACTGAAATGTACAAACTGACCGGTATGCTGGAAAAACACGGCCATCA
GGTCCTGAAGGCCGAGAACGGCGCCGATGGCGTGGCTCTGGCCCGCCAGGAAAAACCCGACGCGGTACTGATGGACATCG
TCATGCCCGGTCTCAACGGTTTCCAGGCCACGCGCCAGTTGACCAAGGATCCGGACACCGGCCACATCCCGGTGATCATC
ATCACTACCAAGGACCAGGACACCGACAAGGTCTGGGGTACGCGCCAAGGCGCGAAGGACTACCTGACCAAGCCGGTGGA
CGAAGAAACCCTGATCGCGACCCTGAACAAAGTGCTGGCGGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
37.815 |
98.347 |
0.372 |
| letA | Legionella pneumophila str. Paris |
35.484 |
100 |
0.364 |
| letA | Legionella pneumophila strain ERS1305867 |
35.484 |
100 |
0.364 |