Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4U48_RS08210 Genome accession   NZ_CP019970
Coordinates   1612244..1612756 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium isolate 2014-VREF-114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1607244..1617756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U48_RS08200 gyrA 1609188..1611659 (+) 2472 WP_002303991.1 DNA gyrase subunit A -
  B4U48_RS08205 rpsF 1611895..1612194 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  B4U48_RS08210 ssb 1612244..1612756 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  B4U48_RS08215 rpsR 1612782..1613018 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  B4U48_RS08220 - 1613161..1615134 (+) 1974 WP_002288371.1 DHH family phosphoesterase -
  B4U48_RS08225 rplI 1615140..1615592 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  B4U48_RS08230 dnaB 1615866..1617233 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=219341 B4U48_RS08210 WP_002288368.1 1612244..1612756(+) (ssb) [Enterococcus faecium isolate 2014-VREF-114]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=219341 B4U48_RS08210 WP_002288368.1 1612244..1612756(+) (ssb) [Enterococcus faecium isolate 2014-VREF-114]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment