Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | C0J56_RS02490 | Genome accession | NZ_CP025542 |
| Coordinates | 561151..561774 (+) | Length | 207 a.a. |
| NCBI ID | WP_109752039.1 | Uniprot ID | A0A6N1CG68 |
| Organism | Pseudomonas fluorescens strain 2P24 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 556151..566774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0J56_RS02475 (C0J56_02480) | - | 556871..559315 (-) | 2445 | WP_167659372.1 | penicillin-binding protein 1A | - |
| C0J56_RS02480 (C0J56_02485) | pilM | 559524..560588 (+) | 1065 | WP_134922513.1 | pilus assembly protein PilM | Machinery gene |
| C0J56_RS02485 (C0J56_02490) | - | 560588..561154 (+) | 567 | WP_134922514.1 | PilN domain-containing protein | - |
| C0J56_RS02490 (C0J56_02495) | pilO | 561151..561774 (+) | 624 | WP_109752039.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| C0J56_RS02495 (C0J56_02500) | - | 561771..562298 (+) | 528 | WP_134922515.1 | pilus assembly protein PilP | - |
| C0J56_RS02500 (C0J56_02505) | pilQ | 562312..564399 (+) | 2088 | WP_134922516.1 | type IV pilus secretin PilQ | Machinery gene |
| C0J56_RS02505 (C0J56_02510) | aroK | 564404..564922 (+) | 519 | WP_003196983.1 | shikimate kinase AroK | - |
| C0J56_RS02510 (C0J56_02515) | aroB | 565071..566171 (+) | 1101 | WP_134922517.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23148.49 Da Isoelectric Point: 4.3966
>NTDB_id=219320 C0J56_RS02490 WP_109752039.1 561151..561774(+) (pilO) [Pseudomonas fluorescens strain 2P24]
MKPGEWFDALRKIDLSDLDTNNIGSWPAPIKWLAGVLLVVLVLGLGYNFALSDLENQLQQVREEENTLKAQFAGKAHMAA
NLERYTEQMKQMETSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQPFYIELPIQITVTGGYHDLATF
VSGVAGLPRIVTLHDFEIAPMEPEAGTKLRMSIQAKTYRYNEQEAQP
MKPGEWFDALRKIDLSDLDTNNIGSWPAPIKWLAGVLLVVLVLGLGYNFALSDLENQLQQVREEENTLKAQFAGKAHMAA
NLERYTEQMKQMETSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQPFYIELPIQITVTGGYHDLATF
VSGVAGLPRIVTLHDFEIAPMEPEAGTKLRMSIQAKTYRYNEQEAQP
Nucleotide
Download Length: 624 bp
>NTDB_id=219320 C0J56_RS02490 WP_109752039.1 561151..561774(+) (pilO) [Pseudomonas fluorescens strain 2P24]
ATGAAACCAGGGGAGTGGTTCGACGCGCTACGCAAGATCGACCTCAGTGACCTGGACACCAACAATATCGGTTCCTGGCC
GGCGCCCATCAAATGGCTGGCCGGCGTCCTGCTGGTGGTCCTGGTGCTGGGGCTGGGCTATAACTTTGCCTTGAGTGACC
TGGAAAACCAGTTGCAGCAGGTGCGCGAGGAAGAAAACACCCTCAAGGCGCAATTCGCGGGCAAGGCTCACATGGCCGCG
AACCTGGAGCGCTACACCGAGCAGATGAAGCAGATGGAAACGTCTTTTGGTGTGCTGTTGCGGCAATTGCCCAGCGATAC
CGAAGTGCCGGGCCTGCTGGAGGACATCACTCGCACCGGCCTGGGCAGTGGCCTGGAGTTCGAGGAAATCAAGCTGCTGC
CGGAGGTCACCCAGCCGTTCTACATCGAGTTGCCGATCCAGATCACCGTGACCGGCGGCTACCACGACCTGGCGACGTTC
GTCAGTGGGGTGGCCGGGTTGCCCCGGATCGTCACGCTGCACGATTTCGAAATCGCTCCGATGGAGCCCGAGGCGGGCAC
GAAGCTGCGCATGAGCATCCAGGCCAAGACCTACCGGTACAACGAGCAGGAGGCGCAACCATGA
ATGAAACCAGGGGAGTGGTTCGACGCGCTACGCAAGATCGACCTCAGTGACCTGGACACCAACAATATCGGTTCCTGGCC
GGCGCCCATCAAATGGCTGGCCGGCGTCCTGCTGGTGGTCCTGGTGCTGGGGCTGGGCTATAACTTTGCCTTGAGTGACC
TGGAAAACCAGTTGCAGCAGGTGCGCGAGGAAGAAAACACCCTCAAGGCGCAATTCGCGGGCAAGGCTCACATGGCCGCG
AACCTGGAGCGCTACACCGAGCAGATGAAGCAGATGGAAACGTCTTTTGGTGTGCTGTTGCGGCAATTGCCCAGCGATAC
CGAAGTGCCGGGCCTGCTGGAGGACATCACTCGCACCGGCCTGGGCAGTGGCCTGGAGTTCGAGGAAATCAAGCTGCTGC
CGGAGGTCACCCAGCCGTTCTACATCGAGTTGCCGATCCAGATCACCGTGACCGGCGGCTACCACGACCTGGCGACGTTC
GTCAGTGGGGTGGCCGGGTTGCCCCGGATCGTCACGCTGCACGATTTCGAAATCGCTCCGATGGAGCCCGAGGCGGGCAC
GAAGCTGCGCATGAGCATCCAGGCCAAGACCTACCGGTACAACGAGCAGGAGGCGCAACCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Legionella pneumophila strain ERS1305867 |
42.857 |
94.686 |
0.406 |
| comO/pilO | Acinetobacter baylyi ADP1 |
43.011 |
89.855 |
0.386 |
| pilO | Acinetobacter baumannii D1279779 |
41.361 |
92.271 |
0.382 |