Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPYM18_RS01350 Genome accession   NC_003485
Coordinates   254087..255013 (+) Length   308 a.a.
NCBI ID   WP_002986004.1    Uniprot ID   Q1JNF8
Organism   Streptococcus pyogenes MGAS8232     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 249087..260013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM18_RS01340 (spyM18_0281) amiA 250550..252520 (+) 1971 WP_011017333.1 peptide ABC transporter substrate-binding protein Regulator
  SPYM18_RS01345 (spyM18_0282) amiC 252585..254087 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  SPYM18_RS01350 (spyM18_0283) amiD 254087..255013 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  SPYM18_RS01355 (spyM18_0284) amiE 255022..256092 (+) 1071 WP_011017335.1 ABC transporter ATP-binding protein Regulator
  SPYM18_RS01360 (spyM18_0285) amiF 256085..257008 (+) 924 WP_011017336.1 ATP-binding cassette domain-containing protein Regulator
  SPYM18_RS10735 - 257046..257129 (-) 84 Protein_227 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34862.81 Da        Isoelectric Point: 8.5670

>NTDB_id=21920 SPYM18_RS01350 WP_002986004.1 254087..255013(+) (amiD) [Streptococcus pyogenes MGAS8232]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=21920 SPYM18_RS01350 WP_002986004.1 254087..255013(+) (amiD) [Streptococcus pyogenes MGAS8232]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATCGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTGCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment