Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LLG50_RS02025 Genome accession   NZ_CP025500
Coordinates   405078..405890 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 400078..410890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS02000 (LLG50_02000) ytpR 400306..400932 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LLG50_RS02005 (LLG50_02005) nox 401095..402435 (+) 1341 WP_058219163.1 H2O-forming NADH oxidase -
  LLG50_RS02010 (LLG50_02010) - 402524..402913 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  LLG50_RS02015 (LLG50_02015) groES 403033..403317 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLG50_RS02020 (LLG50_02020) groL 403405..405033 (+) 1629 WP_058206244.1 chaperonin GroEL -
  LLG50_RS02025 (LLG50_02025) vicX 405078..405890 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLG50_RS02030 (LLG50_02030) vicK 406061..407503 (-) 1443 WP_010905315.1 sensor histidine kinase Regulator
  LLG50_RS02035 (LLG50_02035) yycF 407496..408197 (-) 702 WP_003131580.1 response regulator YycF -
  LLG50_RS02040 (LLG50_02040) tmk 408375..409010 (+) 636 WP_103054462.1 dTMP kinase -
  LLG50_RS02045 (LLG50_02045) - 409143..410003 (+) 861 WP_057719679.1 DNA polymerase III subunit delta' -
  LLG50_RS02050 (LLG50_02050) yaaT 410055..410837 (+) 783 WP_010905316.1 PSP1 domain-containing protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=219150 LLG50_RS02025 WP_003131583.1 405078..405890(-) (vicX) [Lactococcus lactis subsp. lactis strain G50]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=219150 LLG50_RS02025 WP_003131583.1 405078..405890(-) (vicX) [Lactococcus lactis subsp. lactis strain G50]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTAGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACCTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685