Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B2J77_RS06355 Genome accession   NZ_CP019952
Coordinates   1429378..1431594 (+) Length   738 a.a.
NCBI ID   WP_078478207.1    Uniprot ID   -
Organism   Pseudomonas parafulva strain PRS09-11288     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424378..1436594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J77_RS06335 (B2J77_06410) - 1426242..1426865 (+) 624 WP_058637711.1 glutathione S-transferase -
  B2J77_RS06340 (B2J77_06415) - 1427011..1427943 (+) 933 WP_058605758.1 ABC transporter ATP-binding protein -
  B2J77_RS06345 (B2J77_06420) - 1427940..1428719 (+) 780 WP_058637710.1 ABC transporter permease -
  B2J77_RS06350 (B2J77_06425) - 1428603..1429235 (-) 633 WP_153302490.1 DUF2062 domain-containing protein -
  B2J77_RS06355 (B2J77_06430) comA 1429378..1431594 (+) 2217 WP_078478207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B2J77_RS06360 (B2J77_06435) exbB 1431656..1432291 (+) 636 WP_058637708.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B2J77_RS06365 (B2J77_06440) - 1432288..1432722 (+) 435 WP_058605755.1 ExbD/TolR family protein -
  B2J77_RS06370 (B2J77_06445) lpxK 1432722..1433723 (+) 1002 WP_078478208.1 tetraacyldisaccharide 4'-kinase -
  B2J77_RS06375 (B2J77_06450) - 1433767..1433952 (+) 186 WP_003247142.1 Trm112 family protein -
  B2J77_RS06380 (B2J77_06455) kdsB 1433949..1434710 (+) 762 WP_058637706.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B2J77_RS06385 (B2J77_06460) - 1434710..1435174 (+) 465 WP_078478209.1 low molecular weight protein-tyrosine-phosphatase -
  B2J77_RS06390 (B2J77_06465) murB 1435171..1436190 (+) 1020 WP_078478210.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79886.59 Da        Isoelectric Point: 10.2887

>NTDB_id=219115 B2J77_RS06355 WP_078478207.1 1429378..1431594(+) (comA) [Pseudomonas parafulva strain PRS09-11288]
MRTGMLALALGLLSLCLVPQLPSVGWLLMLAAGAVVSLFTRGWLLGLFLLGFCWACWSAKQAVDDRLAPGLDGRTLWLEG
RVAGLPARTAQGVRFELEGAHSRRADLPQRLQLSWFDGPPLRAGEQWRLAVTLQRPTGLLNPHGPDREAQLLARRIGASG
AVKAGQLLTPAAVGWRDGLRERLLAVEAHGRQAALVALVLGDGTGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPPRLPWLPWACVLAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLDAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYSFSARLGAWRPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGDAGEALLWLAGGLLDVLFRALALVAQQRPAWVPPAPPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLLALW
VPREPVSHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGENDLGERVVLPTLRKLGVDSLDVLLVSHAHADHAGGAG
AIQRGLPVRRAIGGEPLEEVQLQPCVSGESWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSTEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALRLVLGAQA
GVEGMRSQRRFWRDVRDG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=219115 B2J77_RS06355 WP_078478207.1 1429378..1431594(+) (comA) [Pseudomonas parafulva strain PRS09-11288]
ATGCGCACAGGGATGTTGGCGCTCGCGCTTGGTCTGCTCAGTCTTTGCCTGGTACCTCAATTGCCATCGGTCGGGTGGCT
GCTAATGCTTGCAGCGGGCGCCGTCGTCAGTCTGTTCACCCGGGGTTGGTTATTGGGTTTGTTCCTGCTGGGCTTCTGCT
GGGCCTGTTGGTCTGCCAAGCAGGCCGTGGACGATCGTCTGGCGCCAGGGCTCGATGGTCGCACCTTGTGGCTGGAAGGG
CGGGTGGCCGGACTGCCGGCGCGCACTGCGCAAGGCGTGCGTTTCGAGCTTGAAGGCGCGCATTCCCGGCGTGCCGATTT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGACCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTCACCCTGC
AGCGGCCGACCGGCCTTCTAAACCCCCACGGGCCCGATCGGGAGGCGCAGCTGCTGGCACGTCGGATCGGCGCCAGCGGA
GCGGTGAAAGCCGGGCAGTTACTGACGCCCGCAGCAGTCGGGTGGCGCGATGGCCTGCGCGAGCGTCTGCTGGCGGTCGA
AGCCCATGGTCGGCAAGCCGCGTTGGTGGCGTTGGTGCTTGGTGATGGAACCGGCCTGGCGCGCGAAGACTGGCAGGCGC
TTCAGGCCACCGGCACCGTGCACCTGCTGGTGATTTCAGGCCAGCACATTGGCCTGGTGGCGGGTCTGCTCTATGCCGTG
GTCGCGTGGTTAGCCCGCTGGGGGCTATGGCCGCCCCGGCTGCCGTGGCTGCCTTGGGCCTGTGTGCTGGCCATGAGTGC
AGCGCTGGCCTACGGCTGGCTGGCCGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGCCTGCGCTTTCGTCACCTTGACGCGTTCCACCCCTTGTTACTTGCCTTGGTTGCCGTTTTGCTGTTCGAGCCGTTG
GCGGCGCTGCTTCCAGGCTTCTGGCTGTCATTCGGCGCCGTGGCCACGCTCATCTACAGCTTCAGTGCTCGGCTAGGGGC
CTGGCGACCCTGGCAGGCATGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGTTGCTCCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGTTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCCTGGCGGTATTGCCGCTGGCGCTG
TTGGGCACTTTGTTGCTGCCGCTGGGCGACGCAGGTGAGGCATTGCTGTGGCTGGCAGGCGGCCTGCTGGATGTCTTGTT
TCGCGCGCTAGCACTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCGGCACCGCCGTTGTGGGCCTGGCTGCTGGTAT
GCCTGGGCGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGCGCGGTGATGCTTTTGGCGCTCTGG
GTGCCTCGGGAGCCGGTCTCGCACGGCCAGGTCGAGGTCTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
CACCCGGCAGCACAGTCTGCTGTATGACGCCGGGCCGGCCAGGGGCGAAAACGATCTGGGTGAGCGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATGTGCTGCTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCAGGT
GCGATCCAGCGCGGGCTGCCGGTCAGACGGGCGATTGGCGGTGAGCCGCTGGAAGAGGTTCAGTTACAGCCTTGCGTCAG
TGGCGAGTCCTGGGAGTGGGACGGGGTTCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAATGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGGGAGCGGTTGCTGCTGGCCGGTGACATGGAGGCGGGAGCCGAACGTGCGTGGCTG
GCTGCCATGGATTCACCACGCATCGACTGGCTGCAGTCGCCGCACCACGGTAGCCGCAGTTCGTCGACCGAAGCTTTCAT
CCGCGCTGCGGCCCCGCGTGGGGTACTGATTTCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGGCATGGCATGACCCTGCACGACACGGCAGTGGAGGGGGCGTTGCGTCTGGTGCTCGGTGCGCAAGCC
GGGGTCGAGGGTATGCGCAGCCAGCGCCGCTTCTGGCGTGACGTCAGGGATGGTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(16-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.693

97.425

0.572
  comA Ralstonia pseudosolanacearum GMI1000

35.584

100

0.371

Multiple sequence alignment