Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B2J77_RS06360 Genome accession   NZ_CP019952
Coordinates   1431656..1432291 (+) Length   211 a.a.
NCBI ID   WP_058637708.1    Uniprot ID   A0AAJ0LMD6
Organism   Pseudomonas parafulva strain PRS09-11288     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426656..1437291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2J77_RS06340 (B2J77_06415) - 1427011..1427943 (+) 933 WP_058605758.1 ABC transporter ATP-binding protein -
  B2J77_RS06345 (B2J77_06420) - 1427940..1428719 (+) 780 WP_058637710.1 ABC transporter permease -
  B2J77_RS06350 (B2J77_06425) - 1428603..1429235 (-) 633 WP_153302490.1 DUF2062 domain-containing protein -
  B2J77_RS06355 (B2J77_06430) comA 1429378..1431594 (+) 2217 WP_078478207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B2J77_RS06360 (B2J77_06435) exbB 1431656..1432291 (+) 636 WP_058637708.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B2J77_RS06365 (B2J77_06440) - 1432288..1432722 (+) 435 WP_058605755.1 ExbD/TolR family protein -
  B2J77_RS06370 (B2J77_06445) lpxK 1432722..1433723 (+) 1002 WP_078478208.1 tetraacyldisaccharide 4'-kinase -
  B2J77_RS06375 (B2J77_06450) - 1433767..1433952 (+) 186 WP_003247142.1 Trm112 family protein -
  B2J77_RS06380 (B2J77_06455) kdsB 1433949..1434710 (+) 762 WP_058637706.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B2J77_RS06385 (B2J77_06460) - 1434710..1435174 (+) 465 WP_078478209.1 low molecular weight protein-tyrosine-phosphatase -
  B2J77_RS06390 (B2J77_06465) murB 1435171..1436190 (+) 1020 WP_078478210.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22801.09 Da        Isoelectric Point: 7.3616

>NTDB_id=219116 B2J77_RS06360 WP_058637708.1 1431656..1432291(+) (exbB) [Pseudomonas parafulva strain PRS09-11288]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=219116 B2J77_RS06360 WP_058637708.1 1431656..1432291(+) (exbB) [Pseudomonas parafulva strain PRS09-11288]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTTGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCTCTGCGTGCCGACTCGCCCTTGGGCGAAATCCTCGCGGCGGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCACGCGTTATCCACGAGCTCGAGCGCTACAT
CGGCACGCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCCGCGGTGCTGGCGGGTGGCATTTCTAAGGCGCTGGTAACCACGGCG
GCCGGGCTGATGGTGGGTATCCCGGCGGTGTTCTTCCACCGCTTTCTGCTGCGCCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAGGCAATCAAGCTGGTGGAAGTGATTCAGGGTGACCGTGAGGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment